Gene detail

Detailed information of g792.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_020624004.1, uncharacterized protein C10orf88-like [Orbicella faveolata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T022	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1
O00422	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1
Q5RDT5	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000021 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000198 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000252 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000283 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000327 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003081 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005550 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007098 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007695 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008788 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015140 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0059409 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0062104 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06487 all species →	SAP18	Sin3 associated polypeptide p18 (SAP18)	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan
PF16211 all species →	Histone_H2A_C	C-terminus of histone H2A	Family	Interproscan
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan
PF12257 all species →	IML1	Vacuolar membrane-associated protein Iml1	Family	Interproscan
PF04658 all species →	TAFII55_N	TAFII55 protein conserved region	Family	Interproscan
PF02995 all species →	DUF229	Protein of unknown function (DUF229)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010516 all species →	Family	Sin3 associated polypeptide p18	Interproscan
IPR042534 all species →	Homologous_superfamily	Sin3 associated polypeptide p18 superfamily	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR028043 all species →	Family	ATPase PAAT-like	Interproscan
IPR002119 all species →	Family	Histone H2A	Interproscan
IPR032458 all species →	Conserved_site	Histone H2A conserved site	Interproscan
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR032454 all species →	Domain	Histone H2A, C-terminal domain	Interproscan
IPR003409 all species →	Repeat	MORN repeat	Interproscan
IPR027244 all species →	Family	Vacuolar membrane-associated protein Iml1	Interproscan
IPR048255 all species →	Domain	Vacuolar membrane-associated protein Iml1, N-terminal domain	Interproscan
IPR006751 all species →	Domain	TAFII55 protein, conserved region	Interproscan
IPR037817 all species →	Family	Transcription initiation factor TFIID subunit 7	Interproscan
IPR000772 all species →	Domain	Ricin B, lectin domain	Interproscan
IPR035992 all species →	Homologous_superfamily	Ricin B-like lectins	Interproscan
IPR004245 all species →	Family	Protein of unknown function DUF229	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13082 all species →	SAP18	Interproscan
PTHR24246 all species →	OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR	Interproscan
PTHR14787 all species →	C10ORF188 FAMILY MEMBER	Interproscan
PTHR23430 all species →	HISTONE H2A	Interproscan
PTHR13179 all species →	DEP DOMAIN CONTAINING PROTEIN 5	Interproscan
PTHR12228 all species →	TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED	Interproscan
PTHR10974 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0006342 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0010508 all species →	Biological Process	positive regulation of autophagy	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:1904262 all species →	Biological Process	negative regulation of TORC1 signaling	Interproscan
GO:1990130 all species →	Cellular Component	GATOR1 complex	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03132	TAF7; transcription initiation factor TFIID subunit 7	-	Chromosome and associated proteins	ko03036	deepkoala
K11251	H2A; histone H2A	-	Exosome	ko04147	deepkoala
K14324	SAP18; histone deacetylase complex subunit SAP18	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →