Gene detail

Detailed information of g7939.t1 in Montipora capitata

Genomic Location: Sc0000188:273172...281623
NR annotation: XP_029189684.2, myocardin-related transcription factor A-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g7939.t1

atggcttggaatttccaaaggcctgaagtagtgcaaggaatggcagtgtcggaatcgcaaccgtctatgagccacgagcaactcgtgagcaacagagacgctctggagagaaagctgtcgcaaagaggacctagggaagaactggtgagcagaggcatcatgccagcggtcagtgctgctccgtcaattatttcccagaggacgaagcttgaaagagcgaagactggtgatcttctacaaaagaaaataaggggaagaccaacccgtggtcaacttgtgcaaaggcatattttgaaagaaacccctggtgctgtggatccatcactgattgacaagcagatgagattgaagaggaagaaactggaagacaacctcaatgacaaattatcctttcgaccgggccctcttgagcttgttaagcaaaatattttggaagctggcactgaaatgagccatgccgtgcaggagggggctgtgccatttacagataccactgcaatttatgaggaaacattgtcaccagaaagcactgactcaccagaaccctcccctgaaccaagcatagttgcatcacctccaagtgttgtatcttctccaggatcaacatgcatttcatcatctgtgcaggctctggcatccttgcaggctcagacacgcaagcattcactagaacaacaggaacagcagcagcaacagcatcagttgtttttacaacaacaaaatggcctgcagcagcctcttccatcacaattgccagtttcatcagcaggaattaagaaggagacaaggcctcgcaagaaaacagctaagtccaaggttaaaaagtacaagtatcacgagtacaggccacccaacggtgatgtgcagaagtctgaattgccatcagattcaccttatggattgcttttgcagcaacaacagctttatcttcagttgcaagtgctgttccagaattatccacagcactgcatgcttccatccattccagagaatgtgaaacttggggcaaattgtgccaaaacgaataacaaggattccgattctgacaaaaacattaaaattgaggatatgcgagttgttgacatgagaagagctctaaaagagcgtggtcttcctgtgtttggttcaaagactgatttaataaagagactaaaagaatgtggagccctttcctcaccggagtccaacagcagcactacttcatctcctgtcgtggtctcatcacagggacagataacaactgctgcccaaagtatttcacaaccacaactaggtcttccaaaacatttactgcaaccactgcagaggtcaaattccgcaccattgcagaatccaaacttgaacactgtgcagcagttgcagatgcagatcttggcaaataatcaaagtctacaacagctcaatgttccccctgaggtacaacagcaactgcagcagctgcagtatctgaatttgcaacttcagttacagcaattaaatatccagcaacagcagaatatacagccgaagccccaggatatagcaactgtcggtcaaactgggacggtaaaaactgagacactgatggacaaaagctgttcattacaaggcagatctgttgagcaaagtcaagttaatgatgagaagccaaaaccatgtggcatccaacaccaaagccgttgcatgcagatgacacctggaaatgttagttttcaacaccaacaggtgcagccacatatagaccatcctgaaaaagcaaattctttggacagtatagactctaacccaggaagtgtcgaaagtcaaattctgtcatgggatcagcaacacccactgtttgatggagggagtgagtcgtatccgtcacctggctcacaacactcagacttgtcaaatttgtctccattacaagtagaccatctctctcgcagcatggaggcaataccaagcactaatctttgtcaagggaattccaaggcagatattcatcttatgcagaggtcttactctgaaaggtccccgtctgaagcgcctgatgattacttcattgtggttccgcagacaaagccaaggtcattgtctgagccgcagttccctgtttcaactcataagcgaagtatgtcttctccgtcagctccctacactactcccccaccaagctacgaggctcacatggctgccaagcaacatcaacaacatcggaatgttgggctggaggatcagatggttagtggttgctcttttacaaaggatgtcagtcccaaacataatgacttggacttgccactggattctgtcattcaggacaaggaattaagtcaagaattacagaaggccatgataaagaatttcccatcttttaatcatgatgatatacttgagatacttggagagcctcgcagtcaacaaccgactaccagtgtaacaacactttatggtggagtagtgtcaccgtcatactcctcaccaggagcccatctgactcaaacaaggagcaagtcacctaactttggaccatatcttagtcagcgcactcttcaaatccacaattctccaggaaggatatctaaaagttgtgaagatgtgagccgtgatgtggccattggcagcaaatttctaccacagttggataacaatgcaatggctgatattgatcactatctttgtccaatgtcccctatgaaaattgactcatgtgatgcagatgagaattcaggcttacttagccactcctcgaattccatacctattccatcgtcaaattttattactggaaggacagaaaatcttaactggctggacttgagtgtgtcacccaactcacagattttatcacatggcaatgtggacgttatgcacaacaacaatcataaaggaactccacccccacatctctatgatcctttgtcaacattcagagatgaacattttcctctttcattatttgatttggaaacgccaacagcacttcatcctccaagtgactttggtgaaacgatggattattgtgtgtag

Transcript

g7939.t1

ATGGCTTGGAATTTCCAAAGGCCTGAAGTAGTGCAAGGAATGGCAGTGTCGGAATCGCAACCGTCTATGAGCCACGAGCAACTCGTGAGCAACAGAGACGCTCTGGAGAGAAAGCTGTCGCAAAGAGGACCTAGGGAAGAACTGGTGAGCAGAGGCATCATGCCAGCGGTCAGTGCTGCTCCGTCAATTATTTCCCAGAGGACGAAGCTTGAAAGAGCGAAGACTGGTGATCTtctacaaaagaaaataagggGAAGACCAACCCGTGGTCAACTTGTGCAAAGGCATATTTTGAAAGAAACCCCTGGTGCTGTGGATCCATCACTGATTGACAAGCAGATGAGATTGAAGAGGAAGAAACTGGAAGACAACCTCAATGACAAATTATCCTTTCGACCGGGCCCTCTTGAGCTTGTTaagcaaaatattttggaaGCTGGCACTGAAATGAGCCATGCCGTGCAGGAGGGGGCTGTGCCATTTACAGATACCACTGCAATTTATGAGGAAACATTGTCACCAGAAAGCACTGACTCACCAGAACCCTCCCCTGAACCAAGCATAGTTGCATCACCTCCAAGTGTTGTATCTTCTCCAGGATCAACATGCATTTCATCATCTGTGCAGGCTCTGGCATCCTTGCAGGCTCAGACACGCAAGCATTCACTAGAACAACAGgaacagcagcagcaacagcatCAGTTgtttttacaacaacaaaatggcCTGCAGCAGCCTCTTCCATCACAATTGCCAGTTTCATCAGCAGGAATTAAGAAGGAGACAAGGCCTCGCAAGAAAACAGCTAAGTCCAAGGTTAAAAAGTACAAGTATCACGAGTACAGGCCACCCAACGGTGATGTGCAGAAGTCTGAATTGCCATCAGATTCACCTTATGGATTGCTTTTGCAGCAACAACAGCtttatcttcagttgcaagtgCTGTTCCAGAATTATCCACAGCACTGCATGCTTCCATCCATTCCAGAGAATGTGAAACTTGGGGCAAATTGTGCCAAAACGAATAACAAGGATTCCGATTCtgacaaaaacattaaaattgaGGATATGCGAGTTGTTGACATGAGAAGAGCTCTAAAAGAGCGTGGTCTTCCTGTGTTTGGTTCAAAGACTGATTTAATAAAGAGACTAAAAGAATGTGGAGCCCTTTCCTCACCGGAGTCCAACAGCAGCACTACTTCATCTCCTGTCGTGGTCTCATCACAGGGACAGATAACAACTGCTGCCCAAAGTATTTCACAACCACAACTAGGTCTTCCAAAACATTTACTGCAACCACTGCAGAGGTCAAATTCCGCACCATTGCAGAATCCAAACTTGAACACTGTGCAGCAGTTGCAGATGCAGATCTTGGCAAATAATCAAAGTCTACAACAGCTCAATGTTCCCCCTGAGGTACAACAGCAACTGCAGCAGCTGCAGTATCTGAATTTGCAACTTCAGTTACAGCAATTAAATATCCAGCAACAGCAGAATATACAGCCGAAGCCCCAGGATATAGCAACTGTCGGTCAAACTGGGACGGTAAAAACTGAGACACTGATGGACAAAAGCTGTTCATTACAAGGCAGATCTGTTGAGCAAAGTCAAGTTAATGATGAGAAGCCAAAACCATGTGGCATCCAACACCAAAGCCGTTGCATGCAGATGACACCTGGAAATGTTAGTTTTCAACACCAACAGGTGCAGCCACATATAGACCATCCTGAAAAAGCAAATTCTTTGGACAGTATAGACTCTAACCCAGGAAGTGTCGAAAGTCAAATTCTGTCATGGGATCAGCAACACCCACTGTTTGATGGAGGGAGTGAGTCGTATCCGTCACCTGGCTCACAACACTCAGACTTGTCAAATTTGTCTCCATTACAAGTAGACCATCTCTCTCGCAGCATGGAGGCAATACCAAGCACTAATCTTTGTCAAGGGAATTCCAAGGCAGATATTCATCTTATGCAGAGGTCTTACTCTGAAAGGTCCCCGTCTGAAGCGCCTGATGATTACTTCATTGTGGTTCCGCAGACAAAGCCAAGGTCATTGTCTGAGCCGCAGTTCCCTGTTTCAACTCATAAGCGAAGTATGTCTTCTCCGTCAGCTCCCTACACTACTCCCCCACCAAGCTACGAGGCTCACATGGCTGCCAAGCAACATCAACAACATCGGAATGTTGGGCTGGAGGATCAGATGGTTAGTGGTTGCTCTTTTACAAAGGATGTCAGTCCCAAACATAATGACTTGGACTTGCCACTGGATTCTGTCATTCAGGACAAGGAATTAAGTCAAGAATTACAGAAGGCCATGATAAAGAATTTCCCATCTTTTAATCATGATGATATACTTGAGATACTTGGAGAGCCTCGCAGTCAACAACCGACTACCAGTGTAACAACACTTTATGGTGGAGTAGTGTCACCGTCATACTCctcaccaggagcccatctgacTCAAACAAGGAGCAAGTCACCTAACTTTGGACCATATCTTAGTCAGCGCACTCTTCAAATCCACAATTCTCCAGGAAGGATATCTAAAAGTTGTGAAGATGTGAGCCGTGATGTGGCCATTGGCAGCAAATTTCTACCACAGTTGGATAACAATGCAATGGCTGATATTGATCACTATCTTTGTCCAATGTCCCCTATGAAAATTGACTCATGTGATGCAGATGAGAATTCAGGCTTACTTAGCCACTCCTCGAATTCCATACCTATTCCATCGTCAAATTTTATTACTGGAAGGACAGAAAATCTTAACTGGCTGGACTTGAGTGTGTCACCCAACTCACAGATTTTATCACATGGCAATGTGGACGTTATGCACAACAACAATCATAAAGGAACTCCACCCCCACATCTCTATGATCCTTTGTCAACATTCAGAGATGAACATTTTCCTCTTTCATTATTTGATTTGGAAACGCCAACAGCACTTCATCCTCCAAGTGACTTTGGTGAAACGATGGATTATTGTGTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7YR76	Myocardin OS=Sus scrofa OX=9823 GN=MYOCD PE=2 SV=1
Q9ULH7	Myocardin-related transcription factor B OS=Homo sapiens OX=9606 GN=MRTFB PE=1 SV=3
Q8AYC1	Myocardin-related transcription factor B OS=Xenopus laevis OX=8355 GN=mrtfb PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004833 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02755 all species →	RPEL	RPEL repeat	Disordered	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043451 all species →	Family	Myocardin-like	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR004018 all species →	Repeat	RPEL repeat	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22793 all species →	MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22525	MKL; MKL/myocardin-like protein	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g7939.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

79.5Max TPM

42.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	42.22	75.34
whole organisms · low pH treatment	15	15	39.92	66.71
whole organisms · extra low pH treatment pH treatment	12	12	45.19	79.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	75.34
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	64.13
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	57.26
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	55.67
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	49.16
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	45.51
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	43.38
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	43.12
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	41.06
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	40.86
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	40.13
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	38.83
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	38.63
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	38.53
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	36.57
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	34.12
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	31.57
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	30.28
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	29.92
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	26.86
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	25.76
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	66.71
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	59.49
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	56.15
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	47.09
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	37.71
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	37.19
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	36.21
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	35.98
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	34.82
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	33.70
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	32.98
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	31.87
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	31.61
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	29.00
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	28.28
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	79.46
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	66.73
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	60.88
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	47.82
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	43.32
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	40.09
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	37.81
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	36.48
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	34.54
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	34.48
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	31.12
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	29.51

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.