Gene detail

Detailed information of g8.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_093157792.1, enoyl-ACP reductase FabI [Aliiruegeria lutimaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58380	Enoyl-[acyl-carrier-protein] reductase [NADH] 1 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=fabI1 PE=3 SV=1
P58381	Enoyl-[acyl-carrier-protein] reductase [NADH] 2 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=fabI2 PE=3 SV=1
Q68X10	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=fabI PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000258 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000437 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000541 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001338 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001367 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001393 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003597 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005574 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009100 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0013825 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015180 (this species only) · gene tree & orthology
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01522 all species →	Polysacc_deac_1	Polysaccharide deacetylase	Family	Interproscan
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan
PF13458 all species →	Peripla_BP_6	Periplasmic binding protein	Family	Interproscan
PF00024 all species →	PAN_1	PAN domain	Domain	Interproscan
PF07527 all species →	Hairy_orange	Hairy Orange	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF08736 all species →	FA	FERM adjacent (FA)	Family	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan
PF00324 all species →	AA_permease	Amino acid permease	Domain	Interproscan
PF03522 all species →	SLC12	Solute carrier family 12	Family	Interproscan
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR052740 all species →	Family	Carbohydrate Esterase 4	Interproscan
IPR002509 all species →	Domain	NodB homology domain	Interproscan
IPR014358 all species →	Family	Enoyl-[acyl-carrier-protein] reductase (NADH)	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR028081 all species →	Domain	Leucine-binding protein domain	Interproscan
IPR000709 all species →	Family	Leu/Ile/Val-binding protein	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR003650 all species →	Domain	Orange domain	Interproscan
IPR050370 all species →	Family	Hairy and Enhancer of Split/HEY-related	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR052033 all species →	Family	Mitochondrial Glutaryl-CoA Dehydrogenase	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR014847 all species →	Domain	FERM adjacent	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR051835 all species →	Family	RAC1-specific guanine nucleotide exchange factor	Interproscan
IPR004841 all species →	Domain	Amino acid permease/ SLC12A domain	Interproscan
IPR004842 all species →	Family	SLC12A transporter family	Interproscan
IPR018491 all species →	Domain	SLC12A transporter, C-terminal	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR006309 all species →	Family	DNA polymerase 3, epsilon subunit	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR006054 all species →	Domain	DNA polymerase III epsilon subunit, exonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45985 all species →	-	Interproscan
PTHR43159 all species →	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE	Interproscan
PTHR47151 all species →	LEU/ILE/VAL-BINDING ABC TRANSPORTER SUBUNIT	Interproscan
PTHR10985 all species →	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED	Interproscan
PTHR42807 all species →	GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR45858 all species →	FERM DOMAIN CONTAINING PROTEIN	Interproscan
PTHR11827 all species →	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	Interproscan
PTHR30231 all species →	DNA POLYMERASE III SUBUNIT EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0004318 all species →	Molecular Function	enoyl-[acyl-carrier-protein] reductase (NADH) activity	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009952 all species →	Biological Process	anterior/posterior pattern specification	Interproscan
GO:0050767 all species →	Biological Process	regulation of neurogenesis	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0000062 all species →	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0004361 all species →	Molecular Function	glutaryl-CoA dehydrogenase activity	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0033539 all species →	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0046949 all species →	Biological Process	fatty-acyl-CoA biosynthetic process	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0006884 all species →	Biological Process	cell volume homeostasis	Interproscan
GO:0008511 all species →	Molecular Function	sodium:potassium:chloride symporter activity	Interproscan
GO:0015377 all species →	Molecular Function	chloride:monoatomic cation symporter activity	Interproscan
GO:0015379 all species →	Molecular Function	potassium:chloride symporter activity	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0055064 all species →	Biological Process	chloride ion homeostasis	Interproscan
GO:0055075 all species →	Biological Process	potassium ion homeostasis	Interproscan
GO:0055078 all species →	Biological Process	sodium ion homeostasis	Interproscan
GO:1902476 all species →	Biological Process	chloride transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0045004 all species →	Biological Process	DNA replication proofreading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00208	fabI; enoyl-[acyl-carrier protein] reductase I	EC:1.3.1.9 EC:1.3.1.10	Lipid biosynthesis proteins	ko01004	deepkoala
K00252	GCDH, gcdH; glutaryl-CoA dehydrogenase	EC:1.3.8.6	Benzoate degradation	ko00362	deepkoala
K01999	livK; branched-chain amino acid transport system substrate-binding protein	-	Transporters	ko02000	deepkoala
K02342	dnaQ; DNA polymerase III subunit epsilon	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala
K04614	V1R; vomeronasal 1 receptor	-	G protein-coupled receptors	ko04030	deepkoala
K06054	HES1; hairy and enhancer of split 1	-	DNA repair and recombination proteins	ko03400	deepkoala
K10951	SLC12A2, NKCC1; solute carrier family 12 (sodium/potassium/chloride transporter), member 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.