Gene detail

Detailed information of g80.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCP5405133.1, ParB N-terminal domain-containing protein [Pseudomonadaceae bacterium]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BRF7	Sec1 family domain-containing protein 1 OS=Mus musculus OX=10090 GN=Scfd1 PE=1 SV=1
Q62991	Sec1 family domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Scfd1 PE=1 SV=1
Q8WVM8	Sec1 family domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SCFD1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000114 (this species only)
Orthogroup (gene family)	OG0000309 (this species only)
Orthogroup (gene family)	OG0001976 (this species only)
Orthogroup (gene family)	OG0003598 (this species only)
Orthogroup (gene family)	OG0003615 (this species only)
Orthogroup (gene family)	OG0004144 (this species only)
Orthogroup (gene family)	OG0004423 (this species only)
Orthogroup (gene family)	OG0010006 (this species only)
Orthogroup (gene family)	OG0016716 (this species only)
Orthogroup (gene family)	OG0080395 (this species only)
Orthogroup (gene family)	OG0080673 (this species only)
Orthogroup (gene family)	OG0170774 (this species only)
Orthogroup (gene family)	OG0171882 (this species only)
Orthogroup (gene family)	OG0172908 (this species only)
Orthogroup (gene family)	OG0173661 (this species only)
Transcription factor family	THAP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF13840 all species →	ACT_7	ACT domain	Domain	Interproscan
PF21389 all species →	CASTOR1_ACT-like	Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like	Domain	Interproscan
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan
PF07225 all species →	NDUF_B4	NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)	Family	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan
PF00995 all species →	Sec1	Sec1 family	Family	Interproscan
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF07506 all species →	RepB	RepB plasmid partitioning protein	Family	Interproscan
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR045865 all species →	Homologous_superfamily	ACT-like domain	Interproscan
IPR051719 all species →	Family	Cytosolic arginine sensor for mTORC1	Interproscan
IPR027795 all species →	Domain	CASTOR, ACT domain	Interproscan
IPR026249 all species →	Family	CASTOR family	Interproscan
IPR049479 all species →	Domain	Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR050448 all species →	Family	OpgB/LTA synthase bacterial cell wall biosynthesis	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan
IPR009866 all species →	Family	NADH:ubiquinone oxidoreductase, subunit NDUFB4	Interproscan
IPR008983 all species →	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR001073 all species →	Domain	C1q domain	Interproscan
IPR052136 all species →	Family	Adipolin/Erythroferrone-related	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR001619 all species →	Family	Sec1-like protein	Interproscan
IPR043154 all species →	Homologous_superfamily	Sec1-like, domain 1	Interproscan
IPR036045 all species →	Homologous_superfamily	Sec1-like superfamily	Interproscan
IPR043127 all species →	Homologous_superfamily	Sec1-like, domain 3a	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR017998 all species →	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR011111 all species →	Domain	RepB plasmid partition	Interproscan
IPR003974 all species →	Family	Potassium channel, voltage dependent, Kv3	Interproscan
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR003968 all species →	Family	Potassium channel, voltage dependent, Kv	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24366 all species →	IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS	Interproscan
PTHR31131 all species →	CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE	Interproscan
PTHR47371 all species →	LIPOTEICHOIC ACID SYNTHASE	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR24019 all species →	ADIPOLIN	Interproscan
PTHR46462 all species →	UPSET, ISOFORM A	Interproscan
PTHR11679 all species →	VESICLE PROTEIN SORTING-ASSOCIATED	Interproscan
PTHR11353 all species →	CHAPERONIN	Interproscan
PTHR11537 all species →	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005179 all species →	Molecular Function	hormone activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0034967 all species →	Cellular Component	Set3 complex	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0070210 all species →	Cellular Component	Rpd3L-Expanded complex	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005832 all species →	Cellular Component	chaperonin-containing T-complex	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0008076 all species →	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005251 all species →	Molecular Function	delayed rectifier potassium channel activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21410	C1QTNF12, FAM132A; adipolin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.