Detailed information of g801.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAF2358481.1, Retrotransposon Pao, partial [Trinorchestia longiramus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6AYD3Proliferation-associated protein 2G4 OS=Rattus norvegicus OX=10116 GN=Pa2g4 PE=1 SV=1
P50580Proliferation-associated protein 2G4 OS=Mus musculus OX=10090 GN=Pa2g4 PE=1 SV=3
Q9UQ80Proliferation-associated protein 2G4 OS=Homo sapiens OX=9606 GN=PA2G4 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10205KLRAQPredicted coiled-coil domain-containing proteinCoiled-coilInterproscan
PF10212PPP1R21_helicalProtein phosphatase 1 regulatory subunit 21, six-helix bundleDomainInterproscan
PF21033RMD1-3Regulator of microtubule dynamics protein 1-3RepeatInterproscan
PF00867XPG_IXPG I-regionFamilyInterproscan
PF00752XPG_NXPG N-terminal domainFamilyInterproscan
PF07535zf-DBFDBF zinc fingerDomainInterproscan
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF06003SMN_TudorSurvival motor neuron protein (SMN), Tudor domainDomainInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan
PF00557Peptidase_M24Metallopeptidase family M24DomainInterproscan
PF04932Wzy_CO-Antigen ligaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040024FamilyProtein phosphatase 1 regulatory subunit 21Interproscan
IPR019343DomainProtein phosphatase 1 regulatory subunit 21, N-terminalInterproscan
IPR019348DomainProtein phosphatase 1 regulatory subunit 21, six-helix bundleInterproscan
IPR049039RepeatRegulator of microtubule dynamics protein 1-3, alpha helical repeatsInterproscan
IPR006086DomainXPG-I domainInterproscan
IPR006084FamilyXPG/Rad2 endonucleaseInterproscan
IPR006085DomainXPG, N-terminalInterproscan
IPR008918Conserved_siteHelix-hairpin-helix motif, class 2Interproscan
IPR044752DomainExonuclease 1-like, PIN-like domainInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR029060Homologous_superfamilyPIN-like domain superfamilyInterproscan
IPR019974Conserved_siteXPG conserved siteInterproscan
IPR036279Homologous_superfamily5'-3' exonuclease, C-terminal domain superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR006572DomainZinc finger, DBF-typeInterproscan
IPR001357DomainBRCT domainInterproscan
IPR051590FamilyDNA Replication Regulatory Kinase SubunitInterproscan
IPR038545Homologous_superfamilyDBF-type zinc finger superfamilyInterproscan
IPR002999DomainTudor domainInterproscan
IPR010304DomainSurvival motor neuron, Tudor domainInterproscan
IPR040031FamilyCodanin-1Interproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036005Homologous_superfamilyCreatinase/aminopeptidase-likeInterproscan
IPR000994DomainPeptidase M24Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR047113FamilyProliferation-associated protein 2G4/ARX1Interproscan
IPR004545FamilyPA2G4 familyInterproscan
IPR051533FamilyBacterial polysaccharide biosynthesis/modification enzymesInterproscan
IPR007016FamilyO-antigen ligase-relatedInterproscan
IPR033304FamilyDeleted in lung and esophageal cancer protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21448SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATEDInterproscan
PTHR11081FLAP ENDONUCLEASE FAMILY MEMBERInterproscan
PTHR15375ACTIVATOR OF S-PHASE KINASE-RELATEDInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR13681SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATEDInterproscan
PTHR28678CODANIN-1Interproscan
PTHR44170PROTEIN SIDEKICKInterproscan
PTHR10804PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE PInterproscan
PTHR37422TEICHURONIC ACID BIOSYNTHESIS PROTEIN TUAEInterproscan
PTHR46348DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005769Cellular Componentearly endosomeInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004518Molecular Functionnuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006298Biological Processmismatch repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0017108Molecular Function5'-flap endonuclease activityInterproscan
GO:0035312Molecular Function5'-3' DNA exonuclease activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016788Molecular Functionhydrolase activity, acting on ester bondsInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0010571Biological Processpositive regulation of nuclear cell cycle DNA replicationInterproscan
GO:0031431Cellular ComponentDbf4-dependent protein kinase complexInterproscan
GO:0043539Molecular Functionprotein serine/threonine kinase activator activityInterproscan
GO:1901987Biological Processregulation of cell cycle phase transitionInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:0006325Biological Processchromatin organizationInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0008285Biological Processnegative regulation of cell population proliferationInterproscan
GO:0015631Molecular Functiontubulin bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12839SMNDC1, SPF30; survival of motor neuron-related-splicing factor 30-Ribosome biogenesisko03009deepkoala
Transportersko02000deepkoala
Spliceosomeko03041deepkoala

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