Gene detail

Detailed information of g8036.t2 in Acropora digitifera

Genomic Location: chr4Alt:3688636...3700718
NR annotation: XP_044175284.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114968522 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8036.t2

ATGGCAACAAATATCGACATTGGCAGCATACATCCGTTCGATTGCAAAGGCAACCCAACGAGCGTAGGACCAAGATGGCGACGTTGGAAACGATCCTTCGAGTTTTTCTTGGAAGCAAAAGGCCTATCAAAGGATTCTCAAAGGACAGCACTGCTCCTACACTGTGCCGGGCAAGACGTCCAAGACATTTTCGACACCCTGACAGACCCAGGACCTGTACCGGACGGAGACACCGAATATGCGAAAGCCATGAGATCGTTAGATGGCTACTTCTTTCCCCAAGTTAGCATCCCTTTTGAACGACACGAATTCCGACAGGCTAAACAAGACGAGTCGGAAACGGCAGACCAATTCGTGATGAAATTATTCCAGCTGTCTGAGCACTGTGAATTTGGAGAGGCCAAGGAAGAGCACATTCGCGACCAGCTAATCGACAAGTGTAAGTCTCACAATCTTCGCAAGAAATTACTAGAAGCAGGTGGAACGCTTACTCTACAGAAAGCACGAGAGATTGCAAGATCAATGGAAGCGGCGGAAAGGCAAGCAAAACAAATAGAGAATGATTCCAGGGGTGAACATGTGCATACACTGGAGGATCATCACCATGTCTCCGGAAGGGGAAAGAGAGGCTGTTGTTACCGATGTGGCATAGAGGGGCACTTCGCTCGAGACCCAGAATGCAAAGCTAGATCAGTTACGTGCTCAAAATGTAGGAAGATTGGCCACTTGGCGAAATGCTGTAGGACCAAGGTTGAGAATAACTCCAAGAGAGGAAATGTTCACCAAATAAGCGAGGACGACTTTGCATTTTCAGTTCAATCAGACATTAGAGACATACCAACCATAGACATTGAACTTGGAGGGATCCAGTTGGAGGGAGTGCTCGTTGACTCTGGTTCCACTTGCAATGTCATTGACAGGGAGACATGGGAAACGCTGAAAAGAAAAAACATCAAATGTAGATCATGGAAGTCAAACCGGAAGTTGTACTCTTATGGCTCTGAGGAACCTCTCAATACTGCTGAGGGAGTTAGCTATAAGAGAAACGTGACTGAATTAAAGAAATACCTGACAGGGAGCGAGGAGTCGGACCAACAAGACACAGGACAAGATGTTGTTGCAGATAGGAATGCCAATACAGGGACCCCAGAGTTAAGAATTCCTTCAAAGAGAGATGACCATGCTCAAGTTAATATTAAATCAAACATGAACTCAGCTAATCCACCTTTTGTCAAAGGAAAAAGTGACCCAAAGTTCCCGCAGCCAAGAAATTTTGATACTCTGAAAATCTACCAAAGAGTTGTGACATTTCGTGATAAAGGCGCTCCTCTGAGAGGAACGGTACGTTTTACTGGTGATATAGAAGATTCAAGTGGACATGTTCAAAGTGTCGTGGGGTTGGAGTTGGATGAAAGCTATGGATATGGAACTGGCAAATGGAGAGGAAAGCAGCTCTTTGTCTGTAACAGGGATTATGCCTACTTTGTTGATATTGAAAATATCATGCTAGAAGAAGATTTTGACAGAGATGCTGAAAGGGCAACGTCACAAAAACAGGATAAACAACTCAGAGACATAAAAGTGCAGGAAAGAAGACATGACACGGAAATACCTACAAGGTCGTTGAGTTGTAATGTTCAATATGAAGCCTCAGATAGAGCATGTAAGGGAACTGTTAGGCGATCAAATTCATTCAATTCAGATGTCATAATTGCTGCTGGAGAAAGCAGTAAGACTGATACCAGAGAATTCATAGAAAAACAACAGAAACTGCTTGATGATTTCAAAAAGCCTGGCTTTTCTGAAGCAGCATATTCTGAGTATGTGACGGTTGGCAAAGATGGTAATGAAGAGGCATGGAAGAGCTATAACAACGTGGGTGAATATGATGAACAGTTTGAAGAAAATGCATCTTCAAGGCAATCAACTTCACTTGACTCAACTTCACTTCAAAAAGCTTTGGAGGACTTACAGCAACTGAAAAATGAAAACAAAAGATTGAATCTTGAAAAATGCCAGTGGGAGAAAGAGAAAAATAATATGCAAGAAGAAAACAAAGAGCTTGTTTTTCAAAATAATAGTTTGCAAACAGATTTGAGAGCAAAGGAATCCCAGGTTCATGAACTGGAAACATCTCTCACTTCAGCTCAGCAAGCTTTGGAGGATATGCAGCAACTGAAAGATGAAAACAACAGATTGAAGCTTGAAAAATGCCAGTTGGAGAAAGAGAGAAATGATGTGCAAGAAGAAAAGGATGAACTTGCGTTTCAAAATAATAGTTTGCAAACAGATTTAAGAGCTAAGGAATCCCAGGTTCACGAACTGAAAACATCTCTCACTACAGCTCAACAAGCTTTGGAAGATATGCAGCAACTGAAAATTGAACACGGCAGGTTGAAGCTTGAAAAATGCCAATTGGAGAAAGAGAGAAATGATGTGCAAGAAGAAAAGGATGAACTTGCGTTTCAAAATAATAGTTTGCAAACAGATTTAAGAGCTAAGGAATCCCAGGTTCACGAACTAAAAACATCTCTCACTACAGCTCAACAAGCTTTGGAAGATATGCAGGAACTGAAAAGTGAGAACAACAGATTGATGCTTGAAAAAGGCCAGTTGGAGAAAGAGAGAAATGATGTGCAAGAAGAAAAAGATGAACTTGTGGTTCAAAAAGATAGTTTGCAAACAGATCTGAGAGCAAAGGAAGCTCAGGTGCACAGACTAGAAACAACTCTCGCCACAGCTCAACGAGCATTGGAGGAGCGTCAGCAAATCAAGGAACCTTGTGATTGGGTAGTTTGTCGTGATGAGGTTCAAATTACTGACAAATGCTTAGGGGAGGGAGCGTGGGGAAAAGTCTCACTTGGATCTTTTAGAGGCTGCAAAGTAGCCGTGAAGGAAATTCATAAGCTGATTCTCTCGCCTTACAACAGACGTCTGTTTGAAAGAGAAATGAACATTGCCTCGAAATGCCGCCATCCTTGTTTGCTTCAGTTTATAGGAGCAACAAATGATGATGGAATTCCTCTTTTCATCACTGAGCTCCTGGATACCAGCTTGAGAGCTTTGCTTGAGCAGCGTCAACTGGCTGACACCGAAATATCCATCATTTCTTTGGACGTATCTCTTGCATTGAACTATCTTCACAACATGAAGCCGTCTCCCATTCTTCATAGAGATGTTAGTAGCGCAAATGTGTTGCTTTGGCGACAGGGTGACCAATGGAGAGGGAAAGTGTCTGATTACGGCACTGCCAAATTTGTGCAACAGACTATGACAAGAACCCCAGGTGCTGTGATTTACAGTGCACCAGAAGCAGTTTCATCTAACCAAACGCCCAAGGTTGATGTGTACAGCTTTGGTGTTCTTCTCTGTGAAATGTGCATTCGGGAAATGCCAGATCCACAAAGACGTCATCAACAAGTTCTTCTTGTGAAAAGCCATGTTTTAAGGAATTTGGTGTTTGAATGTTTACAGGACAATCCAGCTGAGAGACCAGAAATGTCAGAAATTATCAAAGAAATAGAAAGATTTGAAGGATGA

Transcript

chr4Alt.g8036.t2

CAACCTACCAGCCAAACGATTGTGGGAGAAAATGGCAACAAATATCGACATTGGCAGCATACATCCGTTCGATTGCAAAGGCAACCCAACGAGCGTAGGACCAAGATGGCGACGTTGGAAACGATCCTTCGAGTTTTTCTTGGAAGCAAAAGGCCTATCAAAGGATTCTCAAAGGACAGCACTGCTCCTACACTGTGCCGGGCAAGACGTCCAAGACATTTTCGACACCCTGACAGACCCAGGACCTGTACCGGACGGAGACACCGAATATGCGAAAGCCATGAGATCGTTAGATGGCTACTTCTTTCCCCAAGTTAGCATCCCTTTTGAACGACACGAATTCCGACAGGCTAAACAAGACGAGTCGGAAACGGCAGACCAATTCGTGATGAAATTATTCCAGCTGTCTGAGCACTGTGAATTTGGAGAGGCCAAGGAAGAGCACATTCGCGACCAGCTAATCGACAAGTGTAAGTCTCACAATCTTCGCAAGAAATTACTAGAAGCAGGTGGAACGCTTACTCTACAGAAAGCACGAGAGATTGCAAGATCAATGGAAGCGGCGGAAAGGCAAGCAAAACAAATAGAGAATGATTCCAGGGGTGAACATGTGCATACACTGGAGGATCATCACCATGTCTCCGGAAGGGGAAAGAGAGGCTGTTGTTACCGATGTGGCATAGAGGGGCACTTCGCTCGAGACCCAGAATGCAAAGCTAGATCAGTTACGTGCTCAAAATGTAGGAAGATTGGCCACTTGGCGAAATGCTGTAGGACCAAGGTTGAGAATAACTCCAAGAGAGGAAATGTTCACCAAATAAGCGAGGACGACTTTGCATTTTCAGTTCAATCAGACATTAGAGACATACCAACCATAGACATTGAACTTGGAGGGATCCAGTTGGAGGGAGTGCTCGTTGACTCTGGTTCCACTTGCAATGTCATTGACAGGGAGACATGGGAAACGCTGAAAAGAAAAAACATCAAATGTAGATCATGGAAGTCAAACCGGAAGTTGTACTCTTATGGCTCTGAGGAACCTCTCAATACTGCTGAGGGAGTTAGCTATAAGAGAAACGTGACTGAATTAAAGAAATACCTGACAGGGAGCGAGGAGTCGGACCAACAAGACACAGGACAAGATGTTGTTGCAGATAGGAATGCCAATACAGGGACCCCAGAGTTAAGAATTCCTTCAAAGAGAGATGACCATGCTCAAGTTAATATTAAATCAAACATGAACTCAGCTAATCCACCTTTTGTCAAAGGAAAAAGTGACCCAAAGTTCCCGCAGCCAAGAAATTTTGATACTCTGAAAATCTACCAAAGAGTTGTGACATTTCGTGATAAAGGCGCTCCTCTGAGAGGAACGGTACGTTTTACTGGTGATATAGAAGATTCAAGTGGACATGTTCAAAGTGTCGTGGGGTTGGAGTTGGATGAAAGCTATGGATATGGAACTGGCAAATGGAGAGGAAAGCAGCTCTTTGTCTGTAACAGGGATTATGCCTACTTTGTTGATATTGAAAATATCATGCTAGAAGAAGATTTTGACAGAGATGCTGAAAGGGCAACGTCACAAAAACAGGATAAACAACTCAGAGACATAAAAGTGCAGGAAAGAAGACATGACACGGAAATACCTACAAGGTCGTTGAGTTGTAATGTTCAATATGAAGCCTCAGATAGAGCATGTAAGGGAACTGTTAGGCGATCAAATTCATTCAATTCAGATGTCATAATTGCTGCTGGAGAAAGCAGTAAGACTGATACCAGAGAATTCATAGAAAAACAACAGAAACTGCTTGATGATTTCAAAAAGCCTGGCTTTTCTGAAGCAGCATATTCTGAGTATGTGACGGTTGGCAAAGATGGTAATGAAGAGGCATGGAAGAGCTATAACAACGTGGGTGAATATGATGAACAGTTTGAAGAAAATGCATCTTCAAGGCAATCAACTTCACTTGACTCAACTTCACTTCAAAAAGCTTTGGAGGACTTACAGCAACTGAAAAATGAAAACAAAAGATTGAATCTTGAAAAATGCCAGTGGGAGAAAGAGAAAAATAATATGCAAGAAGAAAACAAAGAGCTTGTTTTTCAAAATAATAGTTTGCAAACAGATTTGAGAGCAAAGGAATCCCAGGTTCATGAACTGGAAACATCTCTCACTTCAGCTCAGCAAGCTTTGGAGGATATGCAGCAACTGAAAGATGAAAACAACAGATTGAAGCTTGAAAAATGCCAGTTGGAGAAAGAGAGAAATGATGTGCAAGAAGAAAAGGATGAACTTGCGTTTCAAAATAATAGTTTGCAAACAGATTTAAGAGCTAAGGAATCCCAGGTTCACGAACTGAAAACATCTCTCACTACAGCTCAACAAGCTTTGGAAGATATGCAGCAACTGAAAATTGAACACGGCAGGTTGAAGCTTGAAAAATGCCAATTGGAGAAAGAGAGAAATGATGTGCAAGAAGAAAAGGATGAACTTGCGTTTCAAAATAATAGTTTGCAAACAGATTTAAGAGCTAAGGAATCCCAGGTTCACGAACTAAAAACATCTCTCACTACAGCTCAACAAGCTTTGGAAGATATGCAGGAACTGAAAAGTGAGAACAACAGATTGATGCTTGAAAAAGGCCAGTTGGAGAAAGAGAGAAATGATGTGCAAGAAGAAAAAGATGAACTTGTGGTTCAAAAAGATAGTTTGCAAACAGATCTGAGAGCAAAGGAAGCTCAGGTGCACAGACTAGAAACAACTCTCGCCACAGCTCAACGAGCATTGGAGGAGCGTCAGCAAATCAAGGAACCTTGTGATTGGGTAGTTTGTCGTGATGAGGTTCAAATTACTGACAAATGCTTAGGGGAGGGAGCGTGGGGAAAAGTCTCACTTGGATCTTTTAGAGGCTGCAAAGTAGCCGTGAAGGAAATTCATAAGCTGATTCTCTCGCCTTACAACAGACGTCTGTTTGAAAGAGAAATGAACATTGCCTCGAAATGCCGCCATCCTTGTTTGCTTCAGTTTATAGGAGCAACAAATGATGATGGAATTCCTCTTTTCATCACTGAGCTCCTGGATACCAGCTTGAGAGCTTTGCTTGAGCAGCGTCAACTGGCTGACACCGAAATATCCATCATTTCTTTGGACGTATCTCTTGCATTGAACTATCTTCACAACATGAAGCCGTCTCCCATTCTTCATAGAGATGTTAGTAGCGCAAATGTGTTGCTTTGGCGACAGGGTGACCAATGGAGAGGGAAAGTGTCTGATTACGGCACTGCCAAATTTGTGCAACAGACTATGACAAGAACCCCAGGTGCTGTGATTTACAGTGCACCAGAAGCAGTTTCATCTAACCAAACGCCCAAGGTTGATGTGTACAGCTTTGGTGTTCTTCTCTGTGAAATGTGCATTCGGGAAATGCCAGATCCACAAAGACGTCATCAACAAGTTCTTCTTGTGAAAAGCCATGTTTTAAGGAATTTGGTGTTTGAATGTTTACAGGACAATCCAGCTGAGAGACCAGAAATGTCAGAAATTATCAAAGAAATAGAAAGATTTGAAGGATGAAATCGGATGCTATAACTGCTGAAATGTTAAAGACGTCAATAATAATAATGACAATTATTATATTCAGACTGAAACAGATCGTGGAAACAGAATAGTTCATTTATTTTATGGACCTTTTATAAAGAAATTCTTGTTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54N73	Seven transmembrane domain-containing tyrosine-protein kinase 1 OS=Dictyostelium discoideum OX=44689 GN=7tmk1 PE=3 SV=1
Q54R58	Probable tyrosine-protein kinase DDB_G0283397 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0283397 PE=3 SV=1
P18160	Dual specificity protein kinase splA OS=Dictyostelium discoideum OX=44689 GN=splA PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR051681 all species →	Family	Serine/Threonine Kinases and Pseudokinases	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44329 all species →	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8036.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8036.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.