Gene detail

Detailed information of g804.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_045024551.1, uncharacterized protein K02A2.6-like [Daphnia magna]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T2C4	Prestin OS=Danio rerio OX=7955 GN=slc26a5 PE=2 SV=1
A0FKN5	Prestin OS=Gallus gallus OX=9031 GN=SLC26A5 PE=1 SV=1
Q9JKQ2	Prestin OS=Meriones unguiculatus OX=10047 GN=SLC26A5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000006 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000060 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000117 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001502 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003448 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004041 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004616 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004756 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005179 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006002 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006447 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0030267 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09736 all species →	Bud13	Pre-mRNA-splicing factor of RES complex	Family	Interproscan
PF05649 all species →	Peptidase_M13_N	Peptidase family M13	Family	Interproscan
PF06728 all species →	PIG-U	GPI transamidase subunit PIG-U	Family	Interproscan
PF01347 all species →	Vitellogenin_N	Lipoprotein amino terminal region	Repeat	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF01266 all species →	DAO	FAD dependent oxidoreductase	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00916 all species →	Sulfate_transp	Sulfate permease family	Family	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF11819 all species →	CUPID	Cytohesin Ubiquitin Protein Inducing Domain	Domain	Interproscan
PF21701 all species →	GLOD4_C	Glyoxalasedomain-containing protein 4-like, C-terminal domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018609 all species →	Family	Bud13	Interproscan
IPR051112 all species →	Family	Pre-mRNA-splicing factor CWC26	Interproscan
IPR000718 all species →	Family	Peptidase M13	Interproscan
IPR008753 all species →	Domain	Peptidase M13, N-terminal domain	Interproscan
IPR042089 all species →	Homologous_superfamily	Peptidase M13, domain 2	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR009600 all species →	Family	GPI transamidase subunit PIG-U	Interproscan
IPR011030 all species →	Homologous_superfamily	Lipovitellin-phosvitin complex, superhelical domain	Interproscan
IPR050733 all species →	Family	Vitellogenin/Apolipophorin	Interproscan
IPR001747 all species →	Domain	Vitellogenin, N-terminal	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR050713 all species →	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR006076 all species →	Domain	FAD dependent oxidoreductase	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR011547 all species →	Domain	SLC26A/SulP transporter domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR019747 all species →	Conserved_site	FERM conserved site	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR021774 all species →	Domain	Cytohesin Ubiquitin Protein Inducing Domain	Interproscan
IPR047176 all species →	Family	FERM domain-containing protein 4A/B	Interproscan
IPR043194 all species →	Domain	Glyoxalase domain-containing protein 4, C-terminal	Interproscan
IPR029068 all species →	Homologous_superfamily	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	Interproscan
IPR037523 all species →	Domain	Vicinal oxygen chelate (VOC) domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR050494 all species →	Family	Serine/threonine and dual-specificity kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31809 all species →	BUD13 HOMOLOG	Interproscan
PTHR24246 all species →	OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR	Interproscan
PTHR13121 all species →	GPI TRANSAMIDASE COMPONENT PIG-U	Interproscan
PTHR23345 all species →	VITELLOGENIN-RELATED	Interproscan
PTHR46957 all species →	CYTOKINE RECEPTOR	Interproscan
PTHR13847 all species →	SARCOSINE DEHYDROGENASE-RELATED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR46079 all species →	FERM DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR24058 all species →	DUAL SPECIFICITY PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005684 all species →	Cellular Component	U2-type spliceosomal complex	Interproscan
GO:0070274 all species →	Cellular Component	RES complex	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:1990264 all species →	Biological Process	peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0032981 all species →	Biological Process	mitochondrial respiratory chain complex I assembly	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0090162 all species →	Biological Process	establishment of epithelial cell polarity	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05293	PIGU; GPI-anchor transamidase subunit U	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala
K05695	PTPRF, LAR; receptor-type tyrosine-protein phosphatase F	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala
K13106	BUD13, CWC26; pre-mRNA-splicing factor CWC26	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →