Genomic Location: chr4Alt:3989509...3999692
NR annotation: XP_029196844.2, NACHT domain- and WD repeat-containing protein 1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families
| CDS |
| g8056.t2 |
| Transcript |
| chr4Alt.g8056.t2 |
| Protein |
| chr4Alt.g8056.t2 |
| UniProt accession | Description |
|---|---|
| A6H603 | NACHT domain- and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Nwd1 PE=2 SV=2 |
| Q149M9 | NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=NWD1 PE=1 SV=3 |
| Q9ULI1 | NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NWD2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF05729 all species → | NACHT | NACHT domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011047 all species → | Homologous_superfamily | Quinoprotein alcohol dehydrogenase-like superfamily | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR007111 all species → | Domain | NACHT nucleoside triphosphatase | Interproscan |
| IPR052752 all species → | Family | NACHT and WD repeat domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19871 all species → | BETA TRANSDUCIN-RELATED PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24734 | NWD; NACHT domain- and WD repeat-containing protein | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |
Transcript abundance of g8056.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Coral branch | 39 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM,
StringTie quantification over 39 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.