Gene detail

Detailed information of g8058.t1 in Montipora capitata

Genomic Location: Sc0000192:323188...376753
NR annotation: XP_029208164.2, TBC1 domain family member 5-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8058.t1

atggcgttttatcctttgggaaaagacgacgttaaagtgagattttcccttcctttgcctcaggatgtggagacaccaggaactctcaatcatgtaccggctctgactctggaaggtccaagaaccaagcatgccctctttggttttgcgatggctgtcgcaggagatttgaaccaagatgagtatccagacgttgcgatcagtgctccgtatgcaggccacaatcagggtggtgtggtgtacatcttctttggaagcaaatatggcatcgaaacttgcccgagacaggtaattcaagcgtctgaggtctctcctggtgtaaaaacgtttgggtattcacttgctggtgatatggatatggacaacaatggctatccagatcttgctgttggagcttattcctctgacaaggcctttcttttcagatcaaggtcaattgtaatcatggaagggaatattaccttgaataatacacaaatatctttagaagataacggtacagtaagaaaggcaagcgatggaatttcacgtataagcattgacttgaccgtttgcttgaggtttaagaatcaaaagccaagacagtcctctgggctgcaaaatgttacttataccattgagctcgacaaaagtcgttcaaaagatagcttgcagcgaatgtttttcgtgcaagacaagaagactctttttaaaatcgttcagcaagtttcccttccacaggagcaagaatggtattgcgatttcaatcacacggtctatttaaggaaaaaggaagaaatccgtagcgtaagtgaccctttgacatttgacctggtctacgatcttgcccagccctcctcttgcgagctttgtccgatactaaacgactacaatgacataactcagcggtcttttacagcgaaggctttctttgtaaagcaatgcggaccagacaaactctgcgagcccgatctttctgtcaaaggacaagtgagatttggaagagacgctcctgcagatcacaaagaacttcgcgttggaacagacaacgaattgactgtcgggatagcgttggaaaataaagcacaggactcagcctaccctggaaaggtcattgtcttgtatccgtctataatggactattcgggtagcaatcagggcgtctcttgttccaaaataacaatttcaagaggcttttttggcgcaaagagctcagatgacatcagcaaagtggagtgtattgttggcaaccctttcggaaaatacgcaaagaagcaatttgacatccgatttgacacgcaaagagtgacaggaaacatcagtgagcttgagatttctcttgaagccacaagtcccggcaaagatttgaattcgtctgacaacactgtcaagctgactgttccggtgaagttcgaagcggatcttagcataagcgggatttccaggccagatcaagtcgtgtacaatgacgaagttttaaaggtcaaggagatcaccggcattgggcctgctgttaaaaacatcctaacggtgcgaaatagcggcccgagcccagttgaatacactgaagtggtagttatggtcccgtttcgaaacaaatcggtcgaggagccgaattatttactttatttgacagatgtgcaggttttgggaaacgcaggcagttgtaatatagaagtcgatcccttggatcttcagccaaagaacatttcagattcatcaacttcctcgcagaagaaaccgaaacctttcgtggagcccaaaaatgaagaagtgtcgaaagctggtttgattgaactaaccactacagcagaaatcgtgccatcgtcgtctgttccagaaacgaaaaacgataacaacaacatcaagatcacgctgacagccggtcccaaaaccacgcccaccacaaagagaaaaacagctgtttggatctatgtcgtgtctgcagtcggaggcctcgctcttttagcgattatagcgcttgcactttttaagatcaggcagtatggtttggatggcaagcttcgctcttctaaatttaggagcatttgttggaaggtttttttggagtgtcttccagagcagaaagaagattgggtatctaggacaactaaacttcgaaatgactacacacagttcaaaagcaaatgtttatttgatccaaacaaaggaaagaatgatcaagcagacttggcagtgttcaatcccctctctcaagatgaaaccagtccatggaaacagtatttccttgacagtgagttaaagtcaacaataaagcaagatctggatagactatttccagaaattgacttttttcagcagtcaaaagttaaagaaatgatgctaaatattcttttctgtcatgccaaaaagaacgaagccctcagttataaacagggaatgcatgagcttcttgcacccattgtatatgtgcttcacaaggacacaagcatttgtcagtatcttgagggatcgagtctgaaagtggcaaagtttctcatggactcgaatttcttggagcacgatgcttttgcgctctttgtccagctcatggatcaaaccgaaacttggtacctccaggttcccgtagcaggccgctgtgaaagaaataagtttctggatcctcacgcagaaccatttgctgatcaagaactaatgccatccacagcgattgtcaagaaactcaatcgtattcaagaacacatgttgaggaaatacgatccagagctgtgggtccatatgaaaaacttggacattacgccacaagtttatgggcttcgttggattcgtttgttgtttggtcgtgaatttcccatggatgatgtcctggtattgtgggatgctttgtttgccgacggtcccatgttggatttggtcgacttcatttatattagtatgttggaggccatcagagataaactgcttgcaggaagttactcggcgtgcatgagttatctgatgaaatttccaggtggttttacggacgtgtaccgttatgtgaaaactgctttgataatgagagaaaataagtcgtcgtcatctcgatccagtcctcgaatgccacgttcgccgaaacatcaccccccgtacgcatctggaacctatccgcggcacaaggatcacgagcgacttcagaaacaagtgtcgtcgttgaaatccgagctggataaaatgcagggactctatctttactgcggcagaaaaatggattcttacattgatcttcttcaagacgaactcacaaaggaagaagattctgtccgtgatattgtttacttgtgcttagctggcttgaaacaggtgcgagacttactgaaaggaactttggcgtttcgagggtcaacgatggagacagagtgcgactttatggagatcgataacaatatcgcctcgcgcttacaagtcccaagtcttcataaacaaaaagagagcgacatatccgacactctaccagttccgatgctggcgaattttgggcattttgaatctgagggcgatgaaaaggaaagtagtttcatggctagtaacatcgacggaaaacaaaatggagaaactgcaggctcaagtgagccctcgagcgagggtgatttggaaaatggcgaaggcgcaattgcgggcacgcaacgcaacgaagaacaagccgttgtggattcagaaagcaatggtggaaagcttgttgttgacttagaaaacactggtagtgatattttagttgaaggtggagataatgttgttcatggcgaggagagtttagtccaaggacaacatgacatccagtctggtggttctaattcgtcattttgcggagactcagttgtcacttctgcagaggaaacgagatctaatggtaattcagttaattcaaatgaatcgtgtttatctggtatcgatccaagaacagataatgaaactaataaaccagaagaacaatacggagaaaataatgttctgatcaatagagatgccatagattgtccaaatgggagtgaatccctcgacgacactaagctgtttgaagagacaccccgtccaccaagtgactctgggaacgatgtcactggaacagctcggaccgagtctcttgaccgggagtttgtttttgtcgatcgagatgggactgcgcaggctccaccatcgcatccgttggaacgaagtgacgaatatttttaa

Transcript

g8058.t1

ATGGCGTTTTATCCTTTGGGAAAAGACGACGTTAAAGTGAGATTTTCCCTTCCTTTGCCTCAGGATGTGGAGACACCAGGAACTCTCAATCATGTACCGGCTCTGACTCTGGAAGGTCCAAGAACCAAGCATGCCCTCTTTGGTTTTGCGATGGCTGTCGCAGGAGATTTGAACCAAGATGAGTAtccagACGTTGCGATCAGTGCTCCGTATGCAGGCCACAATCAGGGTGGTGTGGTGTACATCTTCTTTGGAAGCAAATATGGCATCGAAACTTGCCCGAGACAGgtaATTCAAGCGTCTGAGGTCTCTCCTggtgtaaaaacgtttgggtatTCACTTGCTGGTGATATGGATATGGACAACAATGGCTATCCAGaTCTTGCTGTTGGAGCTTATTCCTCTGACAAGGCCTTTCTTTTCAGATCAAGGTCAATTGTAATCATGGAAGGGAATATTACCTTGAATAATACACAAATATCTTTAGAAGATAACGGTACAGTAAGAAAGGCAAGCGATGGAATTTCACGTATAAGcaTTGACTTGACCGTTTGCTTGAGGTTTAAGAATCAAAAGCCAAGACAGTCCTCTGGGCTGCAAAATGTTACTTATACCATTGAGCTCGACAAAAGTCGTTCAAAAGATAGCTTGCAGCGAATGTTTTTCGTGCAAGACAAGAAGACTCTTTTTAAAATCGTTCAGCAAGTTTCCCTTCCACAGGAGCAAGAATGGTATTGCGATTTCAATCACACGGTCTATTTAAGGaaaaaggaagaaatccGTAGCGTAAGTGACCCTTTGACATTTGACCTGGTCTACGATCTTGCCCAGCCCTCCTCTTGCGAGCTTTGTCCGATACTAAACGACTACAATGACATAACTCAGCGGTCTTTTACAGCGAAGGCTTTCTTTGTAAAGCAATGCGGACCAGACAAACTCTGCGAGCCCGATCTTTCTGTCAAAGGACAAGTGAGATTTGGAAGAGACGCTCCTGCAGATCACAAAGAACTTCGCGTTGGAACAGACAACGAATTGACTGTCGGGATAGCGTTGGAAAATAAAGCACAGGACTCAGCCTACCCTGGAAAGGTCATTGTCTTGTATCCGTCTATAATGGACTATTCGGGTAGCAATCAGGGCGTCTCTTGTTCCAAAATAACAATTTCAAGAGGCTTTTTTGGCGCAAAGAGCTCAGATGACATCAGCAAAGTGGAGTGTATTGTTGGCAACCCTTTCGGAAAATACGCAAAGAAGCAATTTGACATCCGATTTGACACGCAAAGAGTGACAGGAAACATCAGTGAGCTTGAGATTTCTCTTGAAGCCACAAGtcCCGGCAAAGATTTGAATTCGTCTGACAACACTGTCAAGCTGACTGTTCCGGTGAAGTTCGAAGCGGATCTTAGCATAAGCGGGATTTCCAGGCCAGATCAAGTCGTGTACAATGACGAAGTTTTAAAGGTCAAGGAGATCACCGGCATTGGGCCTGCTGTTAAAAACATCCTAACGGTGCGAAATAGCGGCCCGAGCCCAGTTGAATACACTGAAGTGGTAGTTATGGTCCCGTTTCGAAACAAATCGGTCGAGGAGCCGAATTATTTACTTTATTTGACAGATGTGCAGgTTTTGGGAAACGCAGGCAGTTGTAATATAGAAGTCGATCCCTTGGATCTTCAGCCAAAGAACATTTCAGATTCATCAACTTCCTCGCAGAAGAAACCGAAACCTTTCGTGGAGCCCAAAAATGAAGAAGTGTCGAAAGCTGGTTTGATTGAACTAACCACTACAGCAGAAATCGTGCCATCGTCGTCTGTTCCAGAAACGAAAAACGATAACAACAACATCAAGATCACGCTGACAGCCGGTCCCAAAACCACGCCCACCACAAAGAGAAAAACAGCTGTTTGGATCTATGTCGTGTCTGCAGTCGGAGGCCTCGCTCTTTTAGCGATTATAGCGCTTGCACTTTTTAAGATCAGGCAGTATGGTTTGGATGGCAAGCTTCGCTCTTCTAAATTTAGGAGCATTTGTTGGAAGGTTTTTTTGGAGTGTCTTCCAGAGCAGAAAGAAGATTGGGTATCTAGGACAACTAAACTTCGAAATGACTACACACAGTTCAAAAGCAAATGTTTATTTGAtccaaacaaaggaaagaatgATCAAGCAGACTTGGCAGTGTTCAATCCCCTCTCTCAAGATGAAACCAGTCCATGGAAACAGTATTTCCTTGACAGTGAGTTAAAGTCAACAATAAAGCAAGATCTGGATAGACTATTTCCAGAAATTGACTTTTTTCAGCAGTCAAAAGTTAAAGAAATGATGCTAAATATTCTTTTCTGTCATGCCAAAAAGAACGAAGCCCTCAGTTATAAACAGGGAATGCATGAGCTTCTTGCACCCATTGTATATGTGCTTCACAAGGACACAAGCATTTGTCAGTATCTTGAGGGATCGAGTCTGAAAGTGGCAAAGTTTCTCATGGACTCGAATTTCTTGGAGCACGATGCTTTTGCGCTCTTTGTCCAGCTCATGGATCAAACCGAAACTTGGTACCTCCAGGTTCCCGTAGCAGGCCGCTGTGAAAGAAATAAGTTTCTGGATCCTCACGCAGAACCATTTGCTGATCAAGAACTAATGCCATCCACAGCGATTgtcaagaaactcaatcgtatTCAAGAACACATGTTGAGGAAATACGATCCAGAGCTGTGGGTCCATATGAAAAACTTGGACATTACGCCACAAGTTTATGGGCTTCGTTGGATTCGTTTGTTGTTTGGTCGTGAATTTCCCATGGATGATGTCCTGGTATTGTGGGATGCTTTGTTTGCCGACGGTCCCATGTTGGATTTGGTCGACTTCATTTATATTAGTATGTTGGAGGCCATCAGAGATAAACTGCTTGCAGGAAGTTACTCGGCGTGCATGAGTTATCTGATGAAATTTCCAGGTGGTTTTACGGACGTGTACCGTTATGTGAAAACTGCTTTGATAATGAGAGAAAATAAGtcgTCGTCATCTCGATCCAGTCCTCGAATGCCACGTTCGCCGAAACATCACCCCCCGTACGCATCTGGAACCTATCCGCGGCACAagGATCACGAGCGACTTCAGAAACAAGTGTCGTCGTTGAAATCCGAGCTGGATAAAATGCAGGGACTCTATCTTTACTGCGGCAGAAAAATGGATTCTTACATTGATCTTCTTCAAGACGAACTCACAAAGGAAGAAGATTCTGTCCGTGATATTGTTTACTTGTGCTTAGCTGGCTTGAAACagGTGCGAGACTTACTGAAAGGAACTTTGGCGTTTCGAGGGTCAACGATGGAGACAGAGTGCGACTTTATGGAGATCGATAACAATATCGCCTCGCGCTTACAAGTCCCAAGTCTTCATAAACAAAAAGAGAGCGACATATCCGACACTCTACCAGTTCCGATGCTGGCGAATTTTGGGCATTTTGAATCTGAGGGCGATGAAAAGGAAAGTAGTTTCATGGCTAGTAACATCGACGGAAAACAAAATGGAGAAACTGCAGGCTCAAGTGAGCCCTCGAGCGAGGGTGATTTGGAAAATGGCGAAGGCGCAATTGCGGGCACGCAACGCAACGAAGAACAAGCCGTTGTGGATTCAGAAAGCAATGGTGGAAAGCTTGTTGTTGACTTAGAAAACACTGGTAGTGATATTTTAGTTGAAGGTGGAGATAATGTTGTTCATGGCGAGGAGAGTTTAGTCCAAGGACAACATGACATCCAGTCTGGTGGTTCTAATTCGTCATTTTGCGGAGACTCAGTTGTCACTTCTGCAGAGGAAACGAGATCTAATGGTAATTCAGTTAATTCAAATGAATCGTGTTTATCTGGTATCGATCCAAGAACAGATAATGAAACTAATAAACCAGAAGAACAATACGGAGAAAATAATGTTCTGATCAATAGAGATGCCATAGATTGTCCAAATGGGAGTGAATCCCTCGACGACACTAAGCTGTTTGAAGAGACACCCCGTCCACCAAGTGACTCTGGGAACGATGTCACTGGAACAGCTCGGACCGAGTCTCTTGACCGGGAGTTTGTTTTTGTCGATCGAGATGGGACTGCGCAGGCTCCACCATCGCATCCGTTGGAACGAAGTGACGAATATTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92609	TBC1 domain family member 5 OS=Homo sapiens OX=9606 GN=TBC1D5 PE=1 SV=1
Q80XQ2	TBC1 domain family member 5 OS=Mus musculus OX=10090 GN=Tbc1d5 PE=1 SV=2
Q54TA5	TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum OX=44689 GN=tbc1d5B PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004119 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08441 all species →	Integrin_A_Ig_1	Integrin alpha Ig-like domain 1	Domain	Interproscan
PF01839 all species →	FG-GAP	FG-GAP repeat	Repeat	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF20805 all species →	Integrin_A_Ig_2	Integrin alpha Ig-like domain 2	Domain	Interproscan
PF20806 all species →	Integrin_A_Ig_3	Integrin alpha Ig-like domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013649 all species →	Domain	Integrin alpha, first immunoglubulin-like domain	Interproscan
IPR032695 all species →	Homologous_superfamily	Integrin domain superfamily	Interproscan
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR013519 all species →	Repeat	Integrin alpha beta-propellor	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR000413 all species →	Family	Integrin alpha chain	Interproscan
IPR048285 all species →	Domain	Integrin alpha, second immunoglobulin-like domain	Interproscan
IPR048286 all species →	Domain	Integrin alpha, third immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23220 all species →	INTEGRIN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0008305 all species →	Cellular Component	integrin complex	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0033627 all species →	Biological Process	cell adhesion mediated by integrin	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8058.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.