Gene detail

Detailed information of g8068.t2 in Tripedalia maipoensis

Genomic Location: scaffold_4:41704184...41766808
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8068.t2

ATGTCAAGCTTAACATTTGGGCCAGAATGGTTAAGAGCTCTTTCTAGTGGAGATGGGGGATCATCACAGTCCAATACCACTCCAGCTTCTATCCCTGTACAGACAGTCAAATATAAGCTGGCAGAGTTTCGATATGGGCGGGAGGAAATGCTTGCCCTCTTCAGTGAGGACGTGCTGCCCCCACCAGAACTCAAAAGCTTTGAGGAGCTCACAAGGGGTAGACCAGGATCACCTTTAGCCCTTCAGCCCCTTACAGAGGAAGAAGAGCGGAGTGTCCATGGAGGTGTCAACAGTGCTCTTGTGGTCAAAATCATGGGCCGTGGTACCCCAGGGAGAGGGAGAGGAGGGACTCGTGGTGGGCGAGGCCGTAGTCGTGGTGATGGAGGGCCAATATTTCATCGCAGCATTTCCAATGAAGATAACTACTCGGGTAGGGTAGGGGATGGATATGGACGACGACCCTGGACAGAGAGTAGTGGTAGAGGCATTTCCTCAGAGCGAGGTAGGGGTTCGGATGGGCCTGTGCAAGGGCGTGGATTCGACCCAAGGCAGCGAGGATTCAGTGAATCGGGTCCCCGTGCGAATCCGGAGCCATGGCGATCGCCAGGCACGGAGGATGAGGAGGTAGTAGGTGGACCAGGCTGGAGGACATCAGGCCAGCGAACCTGGCGTAAGACAGCCTTGGCTGACACTTCGCAAAATTGGCGGCAGGACAGAAGTAAAGATGATGAAGGGGAAGTTCAGCAAAGGGACCGGACCTGGGGGCGTTACGATAATGAAGACCCAGATTGGAAGTCATCTAATCGTAGTGACAGCTTGCCGGAATGGTGCAACGATGACGACGACACTGATGCAACACCTGGAACGTTTGACGACTCGGGACAATTTAGGTCTTATAAGGACAAAAATGATCACAGTAGTAGTTTGGAAAAAATTGACACCAGTGACAATGACCAAACCAATGCAGATAATGGGGAAAAGGTGCGAAAGCAAGAATCCCCCCAGTTGTCGACTTCAACAAGTGTACTAAATGATAATGAAAGTAAATCATTTGAGGACCCACATTTGAATGATAACACTAAATATATAAATTGTATAAATTCGAAATCCATTGATGAAGACTTGACAACAGTATGTGAGACTACAAGTGAGGATGCTGTTGATCAGAAACCCGCAATGTCTAATGAAGATATTTCCGCACAAGTGCCTAGTGATGACAACAGTTCAAAGGTAATGGAAGGCAAAGAGGTAACAAAGGACCCTAAAGAAGACGCTGGCGCCTCTATGCCTCTTCATCAGAACAAAGCTGCTGTTGTAGAGGAAGATCTCGAGCTGAGTATGAAGGACATGGAGCACATCGTGGCAGAGCTGGATGACGAAGAAGAAGAAGACGTTATTCCGGCGGCACGACAAGAGTTGCCAAAGAGAGATTTGCAAAGCATTCAAGATCCAAGTATTCTGTTTGCAAAGAAAGCGGAACCAGGGTCTTCTACCATTAAAGGAATGCTGGACTGGATTTACCGAGACCCTCAGGGAGAAATACAAGGCCCATTCCCAAGCGAAGAAATGCTGGAGTGGTTTAGGGCTGGCTATTTTACGATGGGCTTGTTGGTTCGGAGAGTTTGCGATGAAGTGTTTTTGCCCCTCGGTGACGTAATCAAGTTGTGGAACCGCGTTCCTTTTTCCAGTGGACCAACGTTACCACCTATCTCTTCTCAGGTTGTCGCAGCTGCTCAACAAGCTCAGAGGCAACAGTATGAAAAGTTGTTGCAGAAGCAAGCACCACAACAGCAGGGTTTCCGGGGTGGGGATTTGTCTCCCACTCAACAACTTCAACAGCAACAACAGCAACTGCAGAGGCAGCAGCTAGCGCAACAACAACTTCAACTTCAACAGCAGCAGATGAGGCAAGTTTTGCTACAACAATTGCAGGTGAAGTCGTCAAAGTCAGGAGACAACGTGCCTCGTCCTCAGAGCCTAGACATATCCCAAGACGCCACAATATGGGGTGATAGCCCTGTGCAGTCTCCGAGGACGGAGCCAACAGTTTGGAATAATCGAAAATCGCCGCAAAATGTGGTTGAACTGCATGCAATAGAGGAAGAACGAAGACTAGCGGAGAAGAGGAAGGAGGAGGAAGAGTTAGAAAAAAAGAAGCAGAGATCTGAAGCCCAAAGGAGGGCTCTGGAAAATCTCCAGCAGCAACAACAAAAAATGAGATTAGAACAGCAAAAACAGTTGGAGCAGAAGAAGAGAGAAGAAGAAGAACTAAGGCGCCAGCATCAAGAAGAAATACGAAGGCAGCAGGAGCAACAACATTTATTGCAGGCCAAACTGAGACAACAGCATATGCAACAACAACATCAGCAGAGGCATATGGAAATGACTGGAACACCGGGAAGTGATTCATCCCCTGGATGGGATCTACCGCCAACCAGTGCTGCCCCATCACTTCTGGACATCCAGCGGTTAGAGGAAGAGAAACAGCGGGCAATGCTTGAAAAACTACAACAACTTCAAAACCAGCAGCAGCTTCAGCAACAACAGCAGCGGGGCCATTTGTCCTGGGCTTCCGCGCAAAACTCAACGATGAGCAACGTGAAATCTCTTGCTGAGATTCAAAAAGAGGAGGCCATACAGTTAGCCAAGGAACGTGCACGGTTCCTTCAGCATCATCAGCAACAGCAAAGACAACAGAATTTGGCTGGGAAGAATTACGCATATGGTGGTGGAGCTTGGAACAATGTTACATCCCACCCAAGTGACTCATCTGGAATGTTTTGGGATGACGTTATGAATGTATCATCTCAACTAAATGGTTCTTCTGGGTATAGACGATCAGTGTCGAAAAATAATGGCTTTGGTGACTCAGCTTTTCCAACTCTGTCAAACAGCAGCAAGCAAACAAATCGAAAGAAGAAGGAAGAAGAGGTTGTACAGCGCTTGTTCCAACCAAGCAGTCCTTCAGATGAGTTCATTGAGTGGATCCAGGCCAAATTACCAAAAATATCGGAGAGCGTCGATGTTCCTACCTTCGTGGTGTTCTTGCAAAGCATTGATTCCCCATATGAGTTACGCGAGTATATACAAAGGTACCTTGGAGACAATCCGGACTCCAGAGCGTTTGCCAAGCATTTCACAGATTTCCAAAAGAGGCAGAATGAAGCCAAGAAAACGACTCCTGTGCCCATCACTAGCCCAAACGAAGCATCTATGTATGGATTTGACTCTGAGGTGGACAGCTCGGGCAAGAAGAAGAAGAAAAAGAAAATGCAGAAGGTGAACCCAGACCTCCTTGGTTTCAGTTGCAATGCAGCTACCGATACAGTGAACAGGGGAGAAATCCAGTTCGTAGAAGACGTTTTGAAGCCAAAGTAG

Transcript

g8068.t2

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02213 all species →	GYF	GYF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035445 all species →	Homologous_superfamily	GYF-like domain superfamily	Interproscan
IPR051640 all species →	Family	GRB10-interacting GYF	Interproscan
IPR003169 all species →	Domain	GYF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14445 all species →	GRB10 INTERACTING GYF PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18730	GIGYF; PERQ amino acid-rich with GYF domain-containing protein	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.