Gene detail

Detailed information of g8080.t1 in Montipora capitata

Genomic Location: Sc0000193:412023...415139
NR annotation: XP_015759701.1, PREDICTED: rho GTPase-activating protein 100F-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8080.t1

atgtcaatagtgtcaagggatttgaacgaaattgagttcagttttcgcgaggaaggctgtttcgacgcgacggcaccacagaatatccacggtgaaatcgaaatggagaatgaaacacgaaaacattctcgcagaagcataactgctgaagttatcgccaaaattcaggcgatagacaaggaagatatgcttgaagctggcaaagtcgagacaagtgtcaaaccacagcacaagtttgacaaagagtcgaaagtggacttaaacaggggttatgaatccagtgcaatgaacgacgagagcgagagtaccggccaaacgggaagatttaccattcgcgatgtgccgattgtgaaaagttcaacagcaccgcttggtttttttattcgccaaggagatgggaaagtcactaaacaaggaatatttgtgtcacgtatcacgaaaggaagtgttgtagactccaacggtttgatcgatgtgggcgatgaaattatttctgtgaattacgttcaacttgagggctttagtttggatgatgttgtgcgacttattcaaattcctcgaaaattaattttaacaatcaagacgagtgctctctcaattaagccaaatttatctgttgaagacgcttccaacctccccgtacttcataagaaaacgacagaaaagaggacatcgaaggcatacgaatataaaaatcaggaaaactgtgctcacaattgtaaagaaccaggcaaccgagacaaacaatgtcagcaaacagaaagggaacgatttaaagtggacaatgacaatgcaaatgaggatcgggaccctccacgctcatccgatctaaaacaaagcaatgacactattgaggagctaataagggtaattagagagcagaacagttctaaaaatatagaaaacattccagaatccgtcaacagcctttctttggcaacacagttgtcgcagacacaggacgcacgaagtctaacaaactcgacagtgaatgccagagaaacgagaaaagttggcgttccaaagcgaaacctgtccgccgatagcatagttttgtccaagcgaactccaccgaacgtgacccgaaaatcaagcactttaacacccgtaacgactgtaagtctgatatttgacgaccctgaggatttaacaattgaaccatctgttcataacagtactcctacaaaaaattctatgactcaagacgattctttgaaaacgtcacttagctccccgagctctctggcaagtagcccgaagctgcggcgaagattgccgtgcgttccttccgacagtggtcggtcgactcgatctacagccgagtgcagcactgaaagcaatgtaatctcttccaaggctcaactttctttaccacccgaatcaaggagccgaagaattctccccacacccccaccttctccgccaagctcatcgcgtaaactgtcaaacacaggcaatgaaaaccaacttagtggaaaatcaaatcggaacagtgggagtggactttccgataacgaatccgtagatgatgtatccccttctgcttcttctgcctcccggaaagattccggaaagtcactaagccagctgttcagtgcatttacttctaagaatcactctgatgtgagcgatggaaaagaaaagaggaaagagtcgcaagaaaggcctgaatcaggaaaaaacacttcctcgacccatcgccctccatcaacccaacaagacattttagagcagcaaaaacactcaatgtttttacattcatttgcatccggtagcttgcagccaccaggctttcaaagacgactctttagtcgatcatcccatccgaatttgttgatgacagtctctgaagaaccaacgaaagacgaacgtaaaatatctgccccttctcaatctgctaacggcaccgataacaccaaagtttcccccaaagtttttaaacggcgcgccagccttacatctataggcgagaccttagtcaatcaggttccgtcccaggacatgagtgacattaatcgtcttcggagcgaatccgagcccggcttcatgatatttccagatgattatgcgggacagaatctgttgtcttctcatgccgtgtctgggatggtgtctctacacattatcaaagccacgaacttgcagttaactgataagaaactcttagaaaagaaaaagaaggtccattgcgctgtggaagttgactttgaacagaaggctttgacaagttccaaacgagcatcgaaaactttactgtgggacgaaatgtttgaggttgaaatccaacatggccgtcaagtgtgtctctcttgttacacttctagccacgaattcgataaacccgttgccaaagttttgttcaatttgtcgccttttgtgcggtttggaaagtcgcacaaagttgtatttcgcatgcaaccacaaggggtgatccatctcgaaatgggattcgtcgagatgaggacattgcttcaacgaaccccttccgatcgtaaatcgggcgtctttggctttcaactcaacgtgacttcgcaaaatgagaatacggacgttcctttcgtggtccgcaagtgcgtggaagagatcgacaggcgcggccttacttgtcaaggtctgtatcggatttccggaaatgcccggcgaaagaaacagctacatgcgcagttcgatgaagacagcgcggccgtggatttgtcagaggaaaattatccagatattcacattatcgctgggattttaaaggactatctccgagagctacctgagccactgataacggaatccctgtcaaagcttctaatcaaggcagctaaggaacacgttcaggatcaagatctggcttcacaaaagcgccttctttccaagcttctggttcagttaccccaaatcaatagagagactctgatttacctactgaatcatttcatgcgagtaatcgcggagaaggacacgaacaaaatggacgctcataatctctctgtgtgtttcggtcctgtgcttttgtgtcccccagcaaacctcacagagagcaaagacttgcttgatcttaagcttcacatcaaggtcgtggaatttctcttttatctttggaagaatgcgaattcgacgagttcgtag

Transcript

g8080.t1

ATGTCAATAGTGTCAAGGGATTTGAACGAAATTGAGTTCAGTTTTCGCGAGGAAGGCTGTTTCGACGCGACGGCACCACAGAATATCCACGGTGAAATCGAAATGGAGAATGAAACACGAAAACATTCTCGCAGAAGCATAACTGCTGAAGTTATCGCCAAAATTCAGGCGATAGACAAGGAAGATATGCTTGAAGCTGGCAAAGTCGAGACAAGTGTCAAACCACAGCACAAGTTTGACAAAGAGTCGAAAGTGGACTTAAACAGGGGTTATGAATCCAGTGCAATGAACGACGAGAGCGAGAGTACCGGCCAAACGGGAAGATTTACCATTCGCGATGTGCCGATTGTGAAAAGTTCAACAGCACCGCTTGGTTTTTTTATTCGCCAAGGAGATGGGAAAGTCACTAAACAAGGAATATTTGTGTCACGTATCACGAAAGGAAGTGTTGTAGACTCCAACGGTTTGATCGATGTGGGCGATGAAATTATTTCTGTGAATTACGTTCAACTTGAGGGCTTTAGTTTGGATGATGTTGTGCGACTTATTCAAATTCCTcgaaaattaattttaacaatCAAGACGAGTGCTCTCTCAATTAAGCCAAATTTATCTGTTGAAGACGCTTCCAACCTCCCCGTACTTCATAAGAAAACGACAGAAAAGAGGACATCGAAGGCATACGAATATAAAAATCAGGAAAACTGTGCTCACAATTGTAAAGAACCAGGCAACCGAGACAAACAATGTCAGCAAACAGAAAGGGAACGATTTAAAGTGGACAATGACAATGCAAATGAGGATCGGGACCCTCCACGCTCATCcgatctaaaacaaagcaatgaCACTATTGAGGAGCTAATAAGGGTAATTAGAGAGCAGAACAGTtctaaaaatatagaaaacatTCCAGAATCCGTCAACAGCCTTTCTTTGGCAACACAGTTGTCGCAGACACAGGACGCACGAAGTCTAACAAACTCGACAGTGAATGCCAGAGAAACGAGAAAAGTTGGCGTTCCAAAGCGAAACCTGTCCGCCGATAGCATAGTTTTGTCCAAGCGAACTCCACCGAACGTGACCCGAAAATCAAGCACTTTAACACCCGTAACGACTGTAAGTCTGATATTTGACGACCCTGAGGATTTAACAATTGAACCATCTGTTCATAACAGTACTCCTACAAAAAATTCTATGACTCAAGACGATTCTTTGAAAACGTCACTTAGCTCCCCGAGCTCTCTGGCAAGTAGCCCGAAGCTGCGGCGAAGATTGCCGTGCGTTCCTTCCGACAGTGGTCGGTCGACTCGATCTACAGCCGAGTGCAGCACTGAAAGCAATGTAATCTCTTCCAAGGCTCAACTTTCTTTACCACCCGAATCAAGGAGCCGAAGAATTCTCCCCACACCCCCACCTTCTCCGCCAAGCTCATCGCGTAAACTGTCAAACACAGGCAATGAAAACCAACTTAGTGGAAAATCAAATCGGAACAGTGGGAGTGGACTTTCCGATAACGAATCCGTAGATGATGTATCCCCTTCTGCTTCTTCTGCCTCCCGGAAAGATTCCGGAAAGTCACTAAGCCAGCTGTTCAGTGCATTTACTTCTAAGAATCACTCTGATGTGAGCGATGGAAAAGAAAAGAGGAAAGAGTCGCAAGAAAGGCCTGAATCAGGAAAAAACACTTCCTCGACCCATCGCCCTCCATCAACCCAACAAGACATTTTAGAGCAGCAAAAACACTCAATGTTTTTACATTCATTTGCATCCGGTAGCTTGCAGCCACCAGGCTTTCAAAGACGACTCTTTAGTCGATCATCCCATCCGAATTTGTTGATGACAGTCTCTGAAGAACCAACGAAAGACGAACGTAAAATATCTGCCCCTTCTCAATCTGCTAACGGCACCGATAACACCAAAGTTTCCCCCAAAGTTTTTAAACGGCGCGCCAGCCTTACATCTATAGGCGAGACCTTAGTCAATCAGGTTCCGTCCCAGGACATGAGTGACATTAATCGTCTTCGGAGCGAATCCGAGCCCGGCTTCATGATATTTCCAGATGATTATGCGGGACAGAATCTGTTGTCTTCTCATGCCGTGTCTGGGATGGTGTCTCTACACATTATCAAAGCCACGAACTTGCAgttaactgataagaaactcttagaaaagaaaaagaaggtcCATTGCGCTGTGGAAGTTGACTTTGAACAGAAGGCTTTGACAAGTTCCAAACGAGCATCGAAAACTTTACTGTGGGACGAAATGTTTGAGGTTGaaatccaacatggccgtcaAGTGTGTCTCTCTTGTTACACTTCTAGCCACGAATTCGATAAACCCGTTGCCAAAGTTTTGTTCAATTTGTCGCCTTTTGTGCGGTTTGGAAAGTCGCACAAAGTTGTATTTCGCATGCAACCACAAGGGGTGATCCATCTCGAAATGGGATTCGTCGAGATGAGGACATTGCTTCAACGAACCCCTTCCGATCGTAAATCGGGCGTCTTTGGCTTTCAACTCAACGTGACTTCGCAAAATGAGAATACGGACGTTCCTTTCGTGGTCCGCAAGTGCGTGGAAGAGATCGACAGGCGCGGCCTTACTTGTCAAGGTCTGTATCGGATTTCCGGAAATGCCCGGCGAAAGAAACAGCTACATGCGCAGTTCGATGAAGACAGCGCGGCCGTGGATTTGTCAGAGGAAAATTATCCAGATATTCACATTATCGCTGGGATTTTAAAGGACTATCTCCGAGAGCTACCTGAGCCACTGATAACGGAATCCCTGTCAAAGCTTCTAATCAAGGCAGCTAAGGAACACGTTCAGGATCAAGATCTGGCTTCACAAAAGCGCCTTCTTTCCAAGCTTCTGGTTCAGTTACCCCAAATCAATAGAGAGACTCTGATTTACCTACTGAATCATTTCATGCGAGTAATCGCGGAGAAGGACACGAACAAAATGGACGCTCATAATCTCTCTGTGTGTTTCGGTCCTGTGCTTTTGTGTCCCCCAGCAAACCTCACAGAGAGCAAAGACTTGCTTGATCTTAAGCTTCACATCAAGGTCGTGGAATTTCTCTTTTATCTTTGGAAGAATGCGAATTCGACGAGTTCGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VT97	Rho GTPase-activating protein SYDE2 OS=Homo sapiens OX=9606 GN=SYDE2 PE=1 SV=2
Q9V9S7	Rho GTPase-activating protein 100F OS=Drosophila melanogaster OX=7227 GN=RhoGAP100F PE=1 SV=2
D3ZZN9	Rho GTPase-activating protein SYDE1 OS=Rattus norvegicus OX=10116 GN=Syde1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007735 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR052118 all species →	Family	Rho GTPase-activating regulator	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46150 all species →	RHO GTPASE-ACTIVATING PROTEIN 100F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0046578 all species →	Biological Process	regulation of Ras protein signal transduction	Interproscan
GO:0097060 all species →	Cellular Component	synaptic membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20655	SYDE; Rho GTPase-activating protein SYDE	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.