Gene detail

Detailed information of g8082.t1 in Montipora capitata

Genomic Location: Sc0000193:425686...443844
NR annotation: XP_029198592.2, transcriptional regulator ATRX-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8082.t1

atgaatgatttttgcatgtatcttccaaatgatccattccaagatccatgcattggaaggcgcactggaattcctctgaacattaaagccagaaaagactccaatggctttgaaaacatcgatgactattttcctgattcagacccagaggaggaaaatattgtcccaaatgaacaaattgcagagcaagatgtttttgttggaaggagaactggaatgccatttaacatcaatccaaggaaagattcacatggatttgagattgtggatgactattttcctgactcagtttctgagaagtcaaagggatcttctcctgaaagcagccaaactaacaaaccaatagtgcagatggagaaggaagagaactttccacaaactacaagtgatgctgtagatgaatcaacagtcccagaaacccctggagcaaccattgtgtctccaaatgagactggaactcttataaaaaatccagcgtcatgtgacccaactccacaatttaaaggaaccaagaagaggttgtcatttgcacacggaaaaactccacttgtagttgttgaacacagcaagcctacacagtcaaaaaacccgattaaaaataaggatggtcaaagcgattccgacattgatgtggttgatgttgacaacgatgttggggcagactgccgagaaactactgaagcactgtcgcccacaactctgcaagccacatcaaaggcagcaaagcataatttaacaaagaagagtcgaagtactgtgtctggtgatgatgatgatgaagtcattgacgttgagggaatcgaggatgacaacacattcctcactattgggaatgcaacacggaatgaagggaaggcacccactgacaaattccctgtctttgccgaaaatgagagttttgcaattgatgaaactgttgttctcaaagggacaaaacacaagacaatgtcaccagagtatggatcttcctctgatagtcaaacagacgcaaaacgttctccagtacctaaacaaaacaaatccaagattccagtgagaacaagaaaaagtttgcccattggtattaagcagaagggaaagaaggacaaagaaaatggcccatattctgcggccggaaaagagaagaggaatgaaggtaaaggtcagggacaaagctatgcaaactcctcgaaaagaagattgcaagaggagagtttgataaggggaagacagagaaagcttgtagagaggaataacgaggggccgcagctaaaagaagatgtgcggaattggagtgatgaagaagaaggtgatgtcgatgtggttggagaggaagacaagaccacaaaggggaaaatggaaaacacaagacggaagtctacaagaggattccggaaagcagactcagatgcagcagaaagaccaaaaagcgtcgctggtgcaaagcaacaactaaagaagtcaacacgaaaagcgaagaaaaacgacagaaaggaggacgttgtgccagagtcaggtgaggaagtactcgttgaaggtgaaaagaaaggcaacgttgaaagttgtcaaggggaaaagagaactaaaaaagtaaagaatctgccaaatagaaaacaacaggaagaggaagggagaaaaactggtactctagggaataaagagaatttggaacttgaaattggtgatgatgatgatgatgatggcacatcgaagactcaagaagaaactcaagaaaaagaaacactcaagaaacacacaagaaagactcaagaaaaaggacaaaagaaggaaacggtccaagagaaaaagcaggaatacgaagacaagcaagaaagtgaaggtagtgatggttacaatgaagatgaagttcatgctgaggagaagagatcagaagatcgtgcgagtaaagaaacagaagaggagaagaagacggaaaaacgaagaaaacatgaaaacgaagaaaatttagaaggtaaagttgatgcagaacttagtggaagaaaaacacgggcgcaaaggaagaaagaagcaaatgctaaactaaaagaaaatggcataagtaaagaaactgaaggtatcttcaatggtggggttgaggaagtagaaccgagtgacgccaaaacaagatcgcagaagaaaaagacagatgtccaaataaacaaaactaaggctgtaagtggaagagatagaagtaacgatcatcggttagttgttttaacagaggctgaggaagctaaagaaggcgaacttcacgatgttgaattgggagagtcaaaaaaggaacaaaaggtacatttatgtaagaaaacaggtactaacactttggggtttaaaagaacggatcagttagaaaggcaggatcaggaggcttcatttgaaacaaggaaagagaaaacagatgaaaaagaagtaaccacagaggaaatagctgcggaagaggcggataatgttccgcttgatacaattgacgaacaacaccaagagcaaacattgtccgataaaactgttcaagaatcagtcagtaacatttctaatgtatcaagtacgaatgcgtcatctggttcggaatcaagaaaaaagaatggaactaaacgacgaaaaaaatcaagaatattaccaccgtatacaagaagaacgaccaagtcaagaaagacgaagacttctttgaaaagccaagacggtgcgactgagtcggaagttagaatagacgccaaaaaaccaagatatgaagaagagcaaaaacaatcaaacactgatggtgacttgtctaaggaagaaatggtttcatctagaataactggtagagctgtgtcgaccggaagcaaaaatgctgtaagaaaaaggcctgtggcagaaagaagccaaatttctgataattccgtgtttgagtcacaaaccaatgatgcagataaaattgacgatggaaataaaacaagctgttctgtgcgagaagtcagtgccgtggatgacagaacgtttgaagaaatccgacaagagaacttgacaacaaaacctttttccgtacccagtgttccatctggcggcgtcattaagtcgattcttaaatctggaggcagcactgggcgtggaaaaacagcatctagaaaacggcagatgaactcagataaatcacactcgggtggtagcgacgcagatgacgagggccttcaaccacctaaacaaccgaacagaaaacgtctatcgacagtgagcttcgcgacagcgccctttgtacactcttcgcctgctgataattcgccgttggatgtacctacgccctcctcccttgctggctcgttactgctttccagagacagcagttacttctccacagataaatctttcaccccgggaactagtaccccggggagatcgtctgggtctgggtctgctagtggtatttccagtgcgggggagtcagatattgatccggaagaggaagttacacttactaatggcgataaactagcggaaggtccatcaaatgaggaagggcaaaggagaagcaaaagaaccatcgttccgcccttacaatactggaagaacgaaaggatagactatgaacgacggaaatctggcgggttttgcataaaaggtgtgattagaaacccaactcctacacccaaggtcagaaagaaatccaaagctaagagacctttcactaggaaagaaaaagatacagacgaagtggattcttcagtagaagaggtggataaccaggagttggagggttttgaagagattaccaatccaaagggaaccgttttcaatcccgaagcaaacgaagaagttgaaatggatctctttcacactcctgggatgctgaattttacgaatcccgcgggaaaactcgcaacagacgatgacccgctcttagtgcacaagttcatatcgcagcctctgtttggtggtggacaagtgatcttgagacctggagctgaaaaaggaagacagttcgttcgtaatgacaccatggttttttacgtgataaaaggcaaaatcgttgtaacaattcaccagtcgtcagttgtgctgagcactggctccacattcttcgtaccccaaggaaattcctataagattaaaaatctcaagcaaacggatgcgaagctaatgtttgtccagatcaagggatga

Transcript

g8082.t1

ATGAATGATTTTTGCATGTATCTTCCAAATGATCCATTCCAAGATCCATGCATTGGAAGGCGCACTGGAATTCCTCTGAACATTAAAGCCAGAAAAGACTCCAATGGCTTTGAAAACATCGATGACTATTTTCCTGATTCAGaCCCAGAGGAGGAAAATATTGTCCCAAATGAACAAATTGCAGAGCAAGATGTTTTTGTTGGAAGGAGAACTGGAATGCCATTTAACATCAATCCAAGGAAAGATTCACATGGATTTGAGATTGTGGATGACTATTTTCCTGACTCAGtttctgagaaGTCAAAGGGATCTTCTCCTGAAAGCAGCCAAACTAACAAACCAATAGTGCAGATGGAGAAGGAAGAGAACTTTCCACAAACTACAAGTGATGCTGTAGATGAATCAACAGTCCCAGAAACCCCTGGAGCAACCATTGTGTCTCCAAATGAGACTGGAACTCTTATAAAAAATCCAGCGTCATGTGACCCAACTCCACAATTTAAAGGAACCAAGAAGAGGTTGTCATTTGCACACGGAAAAACTCCACTTGTAGTTGTTGAACACAGCAAGCCTACACAGTCAAAAAACCCGATTAAAAATAAGGATGGTCAAAGCGATTCCGACATTGATGTGGTTGATGTTGACAACGATGTTGGGGCAGACTGCCGAGAAACTACTGAAGCACTGTCGCCCACAACTCTGCAAGCCACATCAAAGGCAGCAAAGCATAATTTAACAAAGAAGAGTCGAAGTACTGTGtctggtgatgatgatgatgaagtcaTTGACGTTGAGGGAATCGAGGATGACAACACATTCCTCACTATTGGGAATGCAACACGGAATGAAGGGAAGGCACCCACTGACAAATTCCCTGTCTTTGCCGAAAATGAGAGTTTTGCAATTGATGAAACTGTTGTTCTCAAAGGGACAAAACACAAGACAATGTCACCAGAGTATGGATCTTCCTCTGATAGTCAAACAGACGCAAAACGTTCTCCAGTACCTAAACAAAACAAATCCAAGATTCCAGTGAGAACAAGAAAAAGTTTGCCCATTGGTATTAAGCAGAAGGGAAAGAAGGACAAAGAAAATGGCCCATATTCTGCGGCCGGAAAAGAGAAGAGGAATGAAGGTAAAGGTCAGGGACAAAGCTATGCAAACTCCTCGAAAAGAAGATTGCAAGAGGAGAGTTTGATAAGGGGAAGACAGAGAAAGCTTGTAGAGAGGAATAACGAGGGGCCGCAGCTAAAAGAAGATGTGCGGAATTGGAGTGATGAAGAAGAAGGTGATGTCGATGTGGTTGGAGAGGAAGACAAGACCACAAAGGGGAAAATGGAAAACACAAGACGGAAGTCTACAAGAGGATTCCGGAAAGCAGACTCAGATGCAGCAGAAAGACCAAAAAGCGTCGCTGGTGCAAAGCAACAACTAAAGAAGTCAACACGAAAAGCGAAGAAAAACGACAGAAAGGAGGACGTTGTGCCAGAGTCAGGTGAGGAAGTACTCGTTGAAGGTGAAAAGAAAGGCAACGTTGAAAGTTGTCAAGGGgaaaagagaactaaaaaaGTAAAGAATCTGCCAAATAGAAAACAACAGGAAGAGGAAGGGAGAAAAACTGGTACTCTAGGGAATAAAGAGAATTTGGAACTTGAaattggtgatgatgatgatgatgatggcacATCGAAGACTCAAGAAGAAactcaagaaaaagaaacactCAAGAAACACACAAGAAAGACTCAAGAAAAAGGACAAAAGAAGGAAACGGTCCAAGAGAAAAAGCAGGAATACGAAGACAAGCAAGAAAGTGAAGGTAGTGATGGTTACAATGAAGATGAAGTTCATGCTGAGGAGAAGAGATCAGAAGATCGTGCGAGTAAAGAAACAGAAGAGGAGAAGAAGACGGAAAAACGAAGAAAACATGAAAACGAAGAAAATTTAGAAGGTAAAGTTGATGCAGAACTTAGTGGAAGAAAAACACGGGCGCAAAGGAAGAAAGAAGCAAATGCTAAACTAAAAGAAAATGGCATAAGTAAAGAAACTGAAGGTATCTTCAATGGTGGGGTTGAGGAAGTAGAACCGAGTGACGCCAAAACAAGATCGCAGAAGAAAAAGACAGATGtccaaataaacaaaactaagGCTGTAAGTGGAAGAGATAGAAGTAACGATCATCGGTTAGTTGTTTTAACAGAGGCTGAGGAAGCTAAAGAAGGCGAACTTCACGATGTTGAATTGGGAGAgtcaaaaaaggaacaaaaggtACATTTATGTAAGAAAACAGGTACTAACACTTTGGGGTTTAAAAGAACGGATCAGTTAGAAAGGCAGGATCAGGAGGCTTCATTTGaaacaaggaaagagaaaacagATGAAAAAGAAGTAACCACAGAGGAAATAGCTGCGGAAGAGGCGGATAATGTTCCGCTTGATACAATTGACGAACAACACCAAGAGCAAACATTGTCCGATAAAACTGTTCAAGAATCAGTCAGTAACATTTCTAATGTATCAAGTACGAATGCGTCATCTGGTTCggaatcaagaaaaaagaatggAACTAAACGACGAAAAAAATCAAGAATATTACCACCGTATACAAGAAGAACGACCAAGTCAAGAAAGACGAAGACTTCTTTGAAAAGCCAAGACGGTGCGACTGAGTCGGAAGTTAGAATAGACGCCAAAAAACCAAGATATGAAGAAGAGCAAAAACAATCAAACACTGATGGTGACTTGTCTAAGGAAGAAATGGTTTCATCTAGAATAACTGGTAGAGCTGTGTCGACCGGAAGCAAAAATGCTGTAAGAAAAAGGCCTGTGGCAGAAAGAAGCCAAATTTCTGATAATTCCGTGTTTGAGTCACAAACCAATGATGCAGATAAAATTGACGATGGAAATAAAACAAGCTGTTCTGTGCGAGAAGTCAGTGCCGTGGATGACAGAACGTTTGAAGAAATCCGACAAGAGAACTTGACAACAAAACCTTTTTCCGTACCCAGTGTTCCATCTGGCGGCGTCATTAAGTCGATTCTTAAATCTGGAGGCAGCACTGGGCGTGGAAAAACAGCATCTAGAAAACGGCAGATGAACTCAGATAAATCACACTCGGGTGGTAGCGACGCAGATGACGAGGGCCTTCAACCACCTAAACAACCGAACAGAAAACGTCTATCGACAGTGAGCTTCGCGACAGCGCCCTTTGTACACTCTTCGCCTGCTGATAATTCGCCGTTGGATGTACCTACGCCCTCCTCCCTTGCTGGCTCGTTACTGCTTTCCAGAGACAGCAGTTACTTCTCCACAGATAAATCTTTCACCCCGGGAACTAGTACCCCGGGGAGATCGTCTGGGTCTGGGTCTGCTAGTGGTATTTCCAGTGCGGGGGAGTCAGATATTGATCCGGAAGAGGAAGTTACACTTACTAATGGCGATAAACTAGCGGAAGGTCCATCAAATGAGGAAGGGCAAAGGAGAAGCAAAAGAACCATCGTTCCGCCCTTACAATACTGGAAGAACGAAAGGATAGACTATGAACGACGGAAATCTGGCGGGTTTTGCATAAAAGGTGTGATTAGAAACCCAACTCCTACACCCAAGGTCAGAAAGAAATCCAAAGCTAAGAGACCTTTCACTAGGAAAGAAAAAGATACAGACGAAGTGGATTCTTCAGTAGAAGAGGTGGATAACCAGGAGTTGGAGGGTTTTGAAGAGATTACCAATCCAAAGGGAACCGTTTTCAATCCCGAAGCAAACGAAGAAGTTGAAATGGATCTCTTTCACACTCCTGGGATGCTGAATTTTACGAATCCCGCGGGAAAACTCGCAACAGACGATGACCCGCTCTTAGTGCACAAGTTCATATCGCAGCCTCTGTTTGGTGGTGGACAAGTGATCTTGAGACCTGGAGCTGAAAAAGGAAGACAGTTCGTTCGTAATGACACCATGGTTTTTTACGTGATAAAAGGCAAAATCGTTGTAACAATTCACCAGTCGTCAGTTGTGCTGAGCACTGGCTCCACATTCTTCGTACCCCAAGGAAATTCCTATAAGATTAAAAATCTCAAGCAAACGGATGCGAAGCTAATGTTTGTCCAGATCAAGGGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03188	Centromere protein C OS=Homo sapiens OX=9606 GN=CENPC PE=1 SV=2
Q9USR9	Inner kinetochore subunit cnp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cnp3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005780 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11699 all species →	CENP-C_C	Mif2/CENP-C like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR025974 all species →	Domain	Mif2/CENP-C cupin domain	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR028386 all species →	Family	Centromere protein C/Mif2/cnp3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16684 all species →	CENTROMERE PROTEIN C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0019237 all species →	Molecular Function	centromeric DNA binding	Interproscan
GO:0051315 all species →	Biological Process	attachment of mitotic spindle microtubules to kinetochore	Interproscan
GO:0051382 all species →	Biological Process	kinetochore assembly	Interproscan
GO:0051455 all species →	Biological Process	spindle attachment to meiosis I kinetochore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11497	CENPC; centromere protein C	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.