Gene detail

Detailed information of g8084.t1 in Tripedalia maipoensis

Genomic Location: scaffold_4:42507032...42521418
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8084.t1

ATGCTCCATATGCGTCAGGTAGTGGAGAAGCATGATGGCGTTCCTGTTGGTACCCAAAATCACTTAAAAGGCCCGCTTCGTTTAGCACCCTCGCCTCTCGGCAGTGCGCCATTGTGCGTAGGCTCCAATGGAGATTCGTTGCAATCGATGAACCCCACTATTTGTCGTACTCCTTCTGCCGGTCCTGGCCAAGTCATGTCACCGATCGTAACGTTTGACCCAAACAATCAGCTTCTGCGTAATATGATAGCACGTGATGTGAACTTGGTCTCAAACTCTGGCGTACAGAAATACGTAAATGAAAGTCGCAAGACTACGAGAGTAGCTAATCTCCCTGATGGTACAGTACAAATCACATTTCGACGCATGGTGCCTTCCGAACAGACGAAGCTTGTCAGACCTACACATCAAATTCCTATTCTACCCAAATCAATAATCAATGACCTTAACTTGTGCCCTTTAGCTGGTGGAAAATCTAAATTACCGACGGAGAATGGAATTGGAGCTTCGGCATTTAATGTAGCACCAAGTCCTATCAGCCCTTGTGTTCTGTCTAGCTCGCAACCAGCTTCATCAGGACCCCTTATCTCAGCATCGTCTAACATTGTTCACTGTTCCAGCACTAACTTCATGAAGGGTGATAACGGTGCTTACCCCCACAATAGTTTTCTTTCACAGACGGTCACTGAATCATTCGCAAGTAACTACCTTAGCTTGGTAGAACCAACTACTAACCCAACCAGCGATGCAGGCATCGCCTCAGATCAAATGTCGTGGGAGTTACAGTCAACTCGTTCATTGCCAGTAACAAAAGGCACGGATAACTCGTCCAGATCTATTTGCCCTAGCGGAGCAATTAGTCCCCCTTTCGATGTTCATTTGCGTCCCTCTAGCACATTAAGTTCTTCCCTAACGGATACTTCCCTTGAAGAGGATCTTAAAAGAGACTTAAATGAGATGTGTCCCGCTCTATTTAGCCCACCGACTATGGATATTGATGATTCAGAAGATCCTACTTATGATATCTGCCCGCGTTCCACTCCAGTTGACTTCGGTTTTAATCAGTCTAACATTTCCATTTCAAGGATATCCAGTGAAAGGCAAAGCCCCAGTCATTGTCGAATGGATCATGATTTGACAGGCAATGTTTATCGAAGCGATTCTGCCCCCGTTAAATCTATTCCTTCCCAACAATCTTGTGTGCCAGTCGGTATTCTATCTGAGACAGGCATAGCAACACCCCGGTTATCTTCGGAAAATGATAACTCAGTACCTTTTGGTCGCTCCTGTGATGTTGGTGCTCCTTTTTCTATGGAAACTGTTATTGGTACCAAAGAGAAGCTAAGTTTCCATAATTCGGGGAATGGCTTAGGACAGAGACCAACAGATGTTGATAGGATCCTGAACCCTAGCAGCGGAATATCTCAGTCGTTTGTAACATCAGAGTCCTTACGTGACATCGTTGATATATCACCGGAGATATCCTCGACAGTAGGGGGCGGGAAAATAATCATCATCGGGGCGTGGAGCAATAGAAATTCTAGTTACTCTTGCTATTTTGGGGATACGAAGGTACCTGCGGAGCTGGTCCAACACGGTGTGCTACGTTGTTTTTGCCCTGCGCATGTTGCTGGAAAAGTTAAACTGCAGGTGTGCGAAAATGAGACACCTGTCTGCCGACCTGCAGTATTCGAGTATGTTGACTCTGAAGTGGATAACGAAGGCTCCAAGGTGGATCTTCATCACTGGTTAGCGATTGAGGACGGGGACCTTAGAAGAAGAATAACTGAAAAAATTTGCAGTGTTCTCAAGGTTGCTGATCCACATGGCACGTTACCATACAAGTTTGATGCTTCAGACATCGAAAGCAAGGAACTGGAAGACAAATTGTGTCAACTATGCGAGAAATTATCTCACTTTGATACACCATTCTGTAATACCCTGCAAGCAGACCATTCAATGACTTTGTTGCATTTGGCAGCAGCACTTGGGTATACGCAGCTCATTCAAACGTTATGCACCTGGACAGACACAAGCAAGACTTGCAGTCTTGCTGTGCAAGAAGCGGACCCCTGCAAGAGAGACCAGTTTGGCTGGATTCCTTTGTTTTGGGCTTGTTCAAGGGGCAAGTTTGACACTGTTTGTGTGTTGCTTCAGTGGGATGAGGCAACAGCTGTTCTGAAAGATCGTTGCGGCTGCTCGGCTCTATCAATTGCAAAGGACCAAAATCATACGGTATTGCTGAGATATTTGGAAAAGTTACGTGACCGAAGGTCATTAAAGGACAAAGCTAAGAAAGCTCACTCTCTTTCCTCGCTGGGACGGGTCCTTTCATCTCCAGGAATCCTTTCTCCTAATCCATGTTCCCTTGGCGACAGCTCGCTCATTGAAGATGTGCAATGGGATAGCAACTCGTTGTTCAGCGATGCATCTGTTACAGGTTCAACGTCCTCTTCACGAACCCTTGCTAAAACGCTCGCTCAGGTCCAGGCTATCATCAAGGATACGAAGGGAGACCGGGATGGGAGCTGTCCCAGTAGCCCAAGCGAGTATGCCACATCAGACGACGAAAGCCTCTTCGATGTTCCACCATTTACACCGAGTCGACAGTGGAATACAAGCGATGATTCGAGAATGCAAATTGCGTCTACGCCATTATCCTCCGTCTCTTCGCTGTCTCCAGGATCACCAAACCAGGGCGTCACGTCTCACTCTCCCTTCAATCCAGCGTCGCGTGATACGGCGGAATTTTGTGAGTTCTTTTACAACTCTAAGGATATCCTTGAGAAAGATTTTGCAGAGCTAACGCTAACAGACCAAGAGCAGCAGGAACTGTATAGGGCAGCAAGTGTTATTCAGAAAGCTTACAAGGCGTACAGGGAAAGGCGGAAGCGACGAGACCACGAATTGCAGGCTGCGACATTAATACAAAGTTACTATAGGAGGTACAAACAGTATGCCTCGTTTAAGAAGATGCAGAAGGGAGCGTTACTGATACAAAGTCAATTCAGAGCACATCGTGAGGAACGCAAAAAAAGTAGAGCTGCCGCTGTTATTCAGACTTACTACAGGCGCTACAGGGAACGCAAGGGTACGCAAGGGAAAGTTCAGGAAAGAAATCGGGCGCAGCAAGAAGCTGAAAGGAAGGCCAGTCGTTTTCTGCTACAGAACTCGAGCAGAATGCGTGATATGCCTGCCGACTTTGGAGCCAAGCCGTTTTGA

Transcript

g8084.t1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005140 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01833 all species →	TIG	IPT/TIG domain	Domain	Interproscan
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23335 all species →	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21596	CAMTA; calmodulin-binding transcription activator	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.