Gene detail

Detailed information of g810.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_006814702.1, PREDICTED: LOW QUALITY PROTEIN: cytoplasmic dynein 2 heavy chain 1-like [Saccoglossus kowalevskii]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NCM8	Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens OX=9606 GN=DYNC2H1 PE=1 SV=4
Q45VK7	Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus OX=10090 GN=Dync2h1 PE=1 SV=1
Q27802	Cytoplasmic dynein 2 heavy chain 1 OS=Tripneustes gratilla OX=7673 GN=DYH1B PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000433 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000645 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000857 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001399 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002128 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004120 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008139 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008636 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0012469 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015178 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015522 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19745 all species →	FUT8_N_cat	Alpha-(1,6)-fucosyltransferase N- and catalytic domains	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02896 all species →	PEP-utilizers_C	PEP-utilising enzyme, PEP-binding domain	Domain	Interproscan
PF01326 all species →	PPDK_N	Pyruvate phosphate dikinase, AMP/ATP-binding domain	Family	Interproscan
PF00391 all species →	PEP-utilizers	PEP-utilising enzyme, mobile domain	Domain	Interproscan
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan
PF13864 all species →	Enkurin	Calmodulin-binding	Family	Interproscan
PF05090 all species →	VKG_Carbox	Vitamin K-dependent gamma-carboxylase	Family	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR027124 all species →	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR045573 all species →	Domain	Alpha-(1,6)-fucosyltransferase, N- and catalytic domain	Interproscan
IPR027350 all species →	Domain	Glycosyltransferase family 23 (GT23) domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR010121 all species →	Family	Pyruvate, phosphate dikinase	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan
IPR018274 all species →	Active_site	PEP-utilising enzyme, active site	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR000121 all species →	Domain	PEP-utilising enzyme, C-terminal	Interproscan
IPR002192 all species →	Domain	Pyruvate phosphate dikinase, AMP/ATP-binding	Interproscan
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR023151 all species →	Conserved_site	PEP-utilising enzyme, conserved site	Interproscan
IPR008279 all species →	Domain	PEP-utilising enzyme, mobile domain	Interproscan
IPR036637 all species →	Homologous_superfamily	Phosphohistidine domain superfamily	Interproscan
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR027012 all species →	Domain	Enkurin domain	Interproscan
IPR052102 all species →	Family	Enkurin domain-containing protein	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR007782 all species →	Family	Vitamin K-dependent gamma-carboxylase	Interproscan
IPR011020 all species →	Domain	HTTM	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR050930 all species →	Family	Major Facilitator Superfamily Vesicular Transporter	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23227 all species →	BUCENTAUR RELATED	Interproscan
PTHR13132 all species →	ALPHA- 1,6 -FUCOSYLTRANSFERASE	Interproscan
PTHR24178 all species →	MOLTING PROTEIN MLT-4	Interproscan
PTHR22931 all species →	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	Interproscan
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan
PTHR21490 all species →	UNCHARACTERIZED	Interproscan
PTHR10676 all species →	DYNEIN HEAVY CHAIN FAMILY PROTEIN	Interproscan
PTHR12639 all species →	VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE	Interproscan
PTHR33802 all species →	SI:CH211-161H7.5-RELATED	Interproscan
PTHR23506 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0036071 all species →	Biological Process	N-glycan fucosylation	Interproscan
GO:0046921 all species →	Molecular Function	alpha-(1->6)-fucosyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0097543 all species →	Cellular Component	ciliary inversin compartment	Interproscan
GO:1904108 all species →	Biological Process	protein localization to ciliary inversin compartment	Interproscan
GO:0006090 all species →	Biological Process	pyruvate metabolic process	Interproscan
GO:0050242 all species →	Molecular Function	pyruvate, phosphate dikinase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan
GO:0001669 all species →	Cellular Component	acrosomal vesicle	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008569 all species →	Molecular Function	minus-end-directed microtubule motor activity	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0097729 all species →	Cellular Component	9+2 motile cilium	Interproscan
GO:0008488 all species →	Molecular Function	gamma-glutamyl carboxylase activity	Interproscan
GO:0017187 all species →	Biological Process	peptidyl-glutamic acid carboxylation	Interproscan
GO:0019842 all species →	Molecular Function	vitamin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01006	ppdK; pyruvate, orthophosphate dikinase	EC:2.7.9.1	Carbon fixation pathways in prokaryotes	ko00720	deepkoala
K10106	GGCX; vitamin K-dependent gamma-carboxylase	EC:4.1.1.90	Ubiquinone and other terpenoid-quinone biosynthesis	ko00130	deepkoala
K14351	AADACL3_4; arylacetamide deacetylase-like 3/4	EC:3.1.1.-	Enzymes with EC numbers	-	deepkoala
K25647	ENKUR; enkurin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →