Gene detail

Detailed information of g813.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_048239768.1, uncharacterized protein LOC124110328 [Haliotis rufescens]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5PQ53	Peflin OS=Xenopus laevis OX=8355 GN=pef1 PE=1 SV=1
Q8BFY6	Peflin OS=Mus musculus OX=10090 GN=Pef1 PE=1 SV=1
Q9UBV8	Peflin OS=Homo sapiens OX=9606 GN=PEF1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13405	EF-hand_6	EF-hand domain	Domain	Interproscan
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan
PF01268	FTHFS	Formate--tetrahydrofolate ligase	Family	Interproscan
PF00573	Ribosomal_L4	Ribosomal protein L4/L1 family	Family	Interproscan
PF02607	B12-binding_2	B12 binding domain	Domain	Interproscan
PF02310	B12-binding	B12 binding domain	Domain	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033551	Family	Dynein regulatory complex subunit 7	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR051426	Family	Peflin/Sorcin Calcium-Binding	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR000217	Family	Tubulin	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR002452	Family	Alpha tubulin	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000559	Family	Formate-tetrahydrofolate ligase, FTHFS	Interproscan
IPR013005	Family	Large ribosomal subunit protein uL4-like	Interproscan
IPR023574	Homologous_superfamily	Large ribosomal subunit protein uL4 domain superfamily	Interproscan
IPR002136	Family	Large ribosomal subunit protein uL4	Interproscan
IPR006158	Domain	Cobalamin (vitamin B12)-binding domain	Interproscan
IPR036594	Homologous_superfamily	Methionine synthase domain	Interproscan
IPR036724	Homologous_superfamily	Cobalamin-binding domain superfamily	Interproscan
IPR003759	Domain	Cobalamin (vitamin B12)-binding module, cap domain	Interproscan
IPR050554	Family	Methionine Synthase/Corrinoid	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR039631	Family	Leucine-rich repeat-containing protein 42	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35249	DYNEIN REGULATORY COMPLEX SUBUNIT 7	Interproscan
PTHR46212	PEFLIN	Interproscan
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR11588	TUBULIN	Interproscan
PTHR10746	50S RIBOSOMAL PROTEIN L4	Interproscan
PTHR45833	METHIONINE SYNTHASE	Interproscan
PTHR31994	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42	Interproscan
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031514	Cellular Component	motile cilium	Interproscan
GO:0048870	Biological Process	cell motility	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0004329	Molecular Function	formate-tetrahydrofolate ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0031419	Molecular Function	cobalamin binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008705	Molecular Function	methionine synthase activity	Interproscan
GO:0009086	Biological Process	methionine biosynthetic process	Interproscan
GO:0046653	Biological Process	tetrahydrofolate metabolic process	Interproscan
GO:0050667	Biological Process	homocysteine metabolic process	Interproscan
GO:0007508	Biological Process	larval heart development	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0061343	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07374	TUBA; tubulin alpha	-	Exosome	ko04147	deepkoala