Gene detail

Detailed information of g8172.t1 in Montipora capitata

Genomic Location: Sc0000197:80296...108023
NR annotation: CAH3030268.1, unnamed protein product [Porites evermanni]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8172.t1

atgagtgcaagcacaaacgctacgtttaggtcgtgtattcgaggcttccatgcgtacaaagacatctgggatgcatctattggtgaggttttagaatgcgaggatcaagaggaagcgattgcagacagcagtgataatatcccacaagaagatcaagagaatgggatagtcctgctggatggaaaacagcaattattggaatcaattgttccagaattcacaggttctacttatttaaaatcagttaccgaggattctcaaactgcaaaaactttcaatgggaaaggtgcaaatgagaaaaatatttggccgggggttgcccctgttccacatgtatcctttgtgaaggattcagactcggcagaaactatgtctaataaaaaggaagttaatattaacatcaaagatgatgatcaaagagatgatcaaaatgagcttagagactcaaaagaaaaagaatttggtcagatggaaactctgacaaagactgagttatcagatgaagatttggaacaccttcgggtgaaaagaaagggtttgataaaggaagaggatgactccactgagaatttagaaaaagatcctgtcactgaggaggagagcaaaagtgcaccatctaaacaggaagggggagataaatttagaactgtagaagtggagaaaaacgttgtagagggtaatgaggatcttgatttggggaaaggcacaggtcaaaatggaaagggtgtgacaacctcagacgaggaaagggatgacaaggaggaggccagagggtcagataaattggaaaaggaatgggataacaaagaggaaaggcctgttattgacaatcaaggggaaagccttgaacaaagtacagttactgaaactgaaatagagaaaacagatcttggctctgacgccaagaaagaggctgatgatgccatgcaaaagcaagatcagagggaacaactaggtaaagggggagatttagaaccacatcaggttgcaagggaagtaacattggaagatgtagctaatgtggagaaagtagctagtggtagaaaagctggaaaagaagtagaattagatcaggagaagatgagtgatagcaaagatgaagagaaaaaggccagtcataataatgaatacgtagaagagaaaaatgaaatgaaaatagcagatgatgaaaaaccagttcatagagggataaatgaagtgaaaaagcaagaagaattgaaagctttggaacaagaaaggttgagaaagcaggaagaagaagaagaagaattactgaaggaaaaggtgagaatggctacagaaaggaaggaaaaggaagaggacaggcggcgaaggttggaaacgttgagaaaacaactggaggagattgagggagccaacgatcaaaggaaggagacaacaaaacagcacagtgaggcagagtcacctatgagacaacaagataaaatagggagaaaggtagtagtggcacatgaggaaaagaattttgataagatgaaaaaagaaggggtgagagttaaacagaatggtaaagatcctggtgttacaaggatgagaaaggttgagaagttggctgtgaaaccaactgtgaagccaccagataagttaaaccaggagcaacagaatggacaaagggtgcttcacaacaggaagcaaggatccaatcataagcaggaagtggagagaattgaacaagaggggactgaagattggaagataaagggagtaagactggatgaacaggaagccgccctgaaaagaaaattagagcagctcgcagaggagcgaaagaagtttgaggaactggctgaagagtacaagatcagcaaacccactgaacgaccaaaggtacgcagaggaggggagcacgcaaaacaaaggcttgtgaaagaaaggccaaaaacaacctctaaggaggaggaaattccagccaaagttgagcgagcctccatcatgcttccagcctctgagaccagcattgttagcagttggactccaactcctcctgctaagaacattgttcctacaaaaaccaactctccagtaaccttgacaagttccacggccaaggcaattccagatattgtgtttctcacggaagatatgatacgaccatctgcctcttcaactggttctttctcaaatacagtcacggaaacaccaatgattcctatgcccaagtctgaccgctctgaaggtgcagaagtaagtaaacctcccaagataatttttgacgcaactctccctctagagaacatcactgaaaggaaatctactaatttctctgcttatgctgtgttcatggaagcttttcggaatttccatgctgtatccttggacgttttgctctcatactggccgatggtgagacacagaacaagagatgtgttagccaatgttggacttgccgcaatgtttgatcagctctgtgatgacctggcatttgtccatcctgctgtcctctttgccacatttttctttggaactctgggaatcttttattttatgtggtctgttacttttggaagaacacgacagggagctgagggacctcatcttcgtgatgtaatgaggagtcagaatgcgagaattaagatcttggaggaggaagtgaagacatcagctgctaaagaagatgacgccaggcggatacgtgattgtgccgagaaagagatgcttatttacaaagatcagctagaagaaggcaaattggtgctaacaaggatgcaaaggaagcttgacaagtcacagaaaaaatatgaggaggttaatgagtatctggaaaaagtgacaaagacagctgaggaatccaaagcagaaattcaggaaagaaatgggagaattgctgaatgtgaaaatcagatttcagaattggaaagggacgttgaaggcaaacaacatgaaattggaaagttggccaatgctctgcaagaaaaacaggaagagattcaagccaataagcaaagcatccaggaactttcagacaaaattcaacagggtgatgaggaaattgaaaagctcaatgatttgctgcaggaggctaagaacaagaaacatagtttacaagtggaatttgatgagcagcttctgcgaatgtcagaacttcagcaacagtataatttcaagtgcgatgaggttgaggtactccaggactgtttgaagcagattaagggaaacacgacaactgacaatgatgttgaggagattgatccaaatgagatggaaaagagattacaagatatgatgaatgtttctaaggccaaggcagaagccaagcaagcccttgaggagcgcgatgccatggcaactgaatttgaggaatacaagagagcaaaccaaattttgaaagaaaaattggaggagcttgaagagaaactgatgcatgtccaagctgctgcggagcaagctactctgataaagcgtgaaaaggagattgaattggaagcattacagcgttacttcaaatccaccgaagtagaactacacaggaaactgactgctgaagaatctgcgcgaatcaacacacagaatcaactgcaatcggaacaagctaaagcttccactgctgttgtggatgcagacaaatacagacaactgtatttggaaatcaaacagcaaatcgaggaaatcgacgaacgctcaaaggaacaggtgcgaatgacatctcggttgtatgatatggaagtcaggggaagccgaccaggttcatctgcgagcagtaatcagatgaatcatgtagatgggcgggactctccacgccaaagcccgcacatgtctggtgttcctggtcatggtagtcctgtgccatttgctccaatgatgggtcatccacccccacctcctcctcctatgtttccaagaagacatccagctgaactagtaatgactccccctcgtgctccatttcctccacctggtcacgtgactcccccagtaacttcaacccctcagcaaccacccaaacccgatgatgttgataccaagaatactcctaaacttcctccaccacctcctctccctatggcaggatttggccccagaccactccccccaatgatgggtatgcccagatttccacttcctcctccgatgatgcctcccactggaaagggaccaatgccaagaggaccaatgccgcctcctccctcgatgttgagaggacctccgccacctccaatgcaaggcccaaggccatcaccttga

Transcript

g8172.t1

ATGAGTGCAAGCACAAACGCTACGTTTAGGTCGTGTATTCGAGGCTTCCATGCGTACAAAGACATCTGGGATGCATCTATTGGTGAGGTTTTAGAATGCGAGGATCAAGAGGAAGCGATTGCAGACAGCAGTGATAATATCCCACAAGAAGATCAAGAGAATGGGATAGTCCTGCTGGATGGAAAACAGCAATTATTGGAATCAATTGTTCCAGAATTCACAGGTTCTACTTATTTAAAATCAGTTACCGAGGATTCtcaaactgcaaaaactttCAATGGGAAAggtgcaaatgagaaaaatatttgGCCGGGGGTTGCCCCTGTTCCACATGTATCCTTTGTGAAGGATTCAGACTCGGCAGAAACTATGTCTAATAAAAAGGAAGTTAATATTAACATCAAAGATGATGATCAAAGAGATGATCAAAATGAGCTTAGAGactcaaaagaaaaagaatttggTCAGATGGAAACTCTGACAAAGACTGAGTTATCAGATGAAGATTTGGAACACCTTCGGGTGAAAAGAAAGGGTTTGATAAAGGAAGAGGATGACTCCACTGAGAATTTAGAAAAAGATCCTGTCACTGAGGAGGAGAGCAAAAGTGCACCATCTAAACAGGAAGGGGGAGATAAATTTAGAACTGTAGAAGTGGAGAAAAACGTTGTAGAGGGTAATGAGGATCTTGATTTGGGGAAAGGCACAGGTCAAAATGGAAAGGGTGTGACAACCTCAGACGAGGAAAGGGATGACAAGGAGGAGGCCAGAGGGTCAGATAAATTGGAAAAGGAATGGGATAACAAAGAGGAAAGGCCTGTTATTGACAATCAAGGGGAAAGCCTTGAACAAAGTACAGTTACTGAAACTGAAATAGAGAAAACAGATCTTGGCTCTGACGCCAAGAAAGAGGCTGATGATGCCATGCAAAAGCAAGATCAGAGGGAACAACTAGGTAAAGGGGGAGATTTAGAACCACATCAGGTTGCAAGGGAAGTAACATTGGAAGATGTAGCTAATGTGGAGAAAGTAGCTAGTGGTAGAAAAGCTGGAAAAGAAGTAGAATTAGATCAGGAGAAGATGAGTGATAGCAAAGATGAAGAGAAAAAGGCCAGTCATAATAATGAATACGTAGAagagaaaaatgaaatgaaaatagcAGATGATGAAAAACCAGTTCATAGAGGGATAAATGAAGTGAAAAAGCAAGAAGAATTGAAAGCTTTGGAACAAGAAAGGTTGAGAAAgcaggaagaagaagaagaagaattactGAAGGAAAAGGTGAGAATGGCTACAGAAAGGAAGGAAAAGGAAGAGGACAGGCGGCGAAGGTTGGAAACGTTGAGAAAACAACTGGAGGAGATTGAGGGAGCCAACGATCAAAGGAAGGAGACAACAAAACAGCACAGTGAGGCAGAGTCACCTATGAGACAACAAGATAAAATAGGGAGAAAGGTAGTAGTGGCACATGAGGAAAAGAATTTTGATAAGATGAAAAAAGAAGGGGTGAGAGTTAAACAGAATGGTAAAGATCCTGGTGTTACAAGGATGAGAAAGGTTGAGAAGTTGGCTGTGAAACCAACTGTGAAGCCACCAGATAAGTTAAACCAGGAGCAACAGAATGGACAAAGGGTGCTTCACAACAGGAAGCAAGGATCCAATCATAAGCAGGAAGTGGAGAGAATTGAACAAGAGGGGACTGAAGATTGGAAGATAAAGGGAGTAAGACTGGATGAACAGGAAGCCGccctgaaaagaaaattagagCAGCTCGCAGAGGAGCGAAAGAAGTTTGAGGAACTGGCTGAAGAGTACAAGATCAGCAAACCCACTGAACGACCAAAGGTACGCAGAGGAGGGGAGCACGCAAAACAAAGGCTTGTGAAAGAAAGGCCAAAAACAACCTCTAAGGAGGAGGAAATTCCAGCCAAAGTTGAGCGAGCCTCCATCATGCTTCCAGCCTCTGAGACCAGCATTGTTAGCAGTTGGACTCCAACTCCTCCTGCTAAGAACATTGTTCCTACAAAAACCAACTCTCCAGTAACCTTGACAAGTTCCACGGCCAAGGCAATTCCAGATATTGTGTTTCTCACGGAAGATATGATACGACCATCTGCCTCTTCAACTGGTTCTTTCTCAAATACAGTCACGGAAACACCAATGATTCCTATGCCCAAGTCTGACCGCTCTGAAGGTGCAGAAGTAAGTAAACCTCCCAAGATAATTTTTGACGCAACTCTCCCTCTAGAGAACATCACTGAAAGGAAATCTACTAATTTCTCTGCTTATGCTGTGTTCATGGAAGCTTTTCGGAATTTCCATGCTGTATCCTTGGACGTTTTGCTCTCATACTGGCCGATGGTGAGACACAGAACAAGAGATGTGTTAGCCAATGTTGGACTTGCCGCAATGTTTGATCAGCTCTGTGATGACCTGGCATTTGTCCATCCTGCTGTCCTCTTTGCCACATTTTTCTTTGGAACTCTGGGAATCTTTTATTTTATGTGGTCTGTTACTTTTGGAAGAACACGACAGGGAGCTGAGGGACCTCATCTTCGTGATGTAATGAGGAGTCAGAATGCGAGAATTAAGATCTTGGAGGAGGAAGTGAAGACATCAGCTGCTAAAGAAGATGACGCCAGGCGGATACGTGATTGTGCCGAGAAAGAGatgcTTATTTACAAAGATCAGCTAGAAGAAGGCAAATTGGTGCTAACAAGGATGCAAAGGAAGCTTGACAAGTCACAGAAAAAATATGAGGAGGTTAATGAGTATCTGGAAAAAGTGACAAAGACAGCTGAGGAATCCAAAGCAGAAATTCAGGAAAGAAATGGGAGAATTGCTGAATGTGAAAATCAGATTTCAGAATTGGAAAGGGACGTTGAAGGCAAACAACATGAAATTGGAAAGTTGGCCAATGCTCTGCAAGAAAAACAGGAAGAGATTCAAGCCAATAAGCAAAGCATCCAGGAACTTTCAGACAAAATTCAACAGGGTGATGAGGAAATTGAAAAGCTCAATGATTTGCTGCAGGAGGCTAAGAACAAGAAACATAGTTTACAAGTGGAATTTGATGAGCAGCTTCTGCGAATGTCAGAACTTCAGCAACAGTATAATTTCAAGTGCGATGAGGTTGAGGTACTCCAGGACTGTTTGAAGCAGATTAAGGGAAACACGACAACTGACAATGATGTTGAGGAGATTGaTCCAAATGAGATGGAAAAGAGATTACAAGATATGATGAATGTTTCTAAGGCCAAGGCAGAAGCCAAGCAAGCCCTTGAGGAGCGCGATGCCATGGCAACTGAATTTGAGGAATACAAGAGAGCAAACCAAATTTTGAAAGAAAAATTGGAGGAGCTTGAAGAGAAACTGATGCATGTCCAAGCTGCTGCGGAGCAAGCTACTCTGATAAAGCGTGAAAAGGAGATTGAATTGGAAGCATTACAGCGTTACTTCAAATCCACCGAAGTAGAACTACACAGGAAACTGACTGCTGAAGAATCTGCGCGAATCAACACACAGAATCAACTGCAATCGGAACAAGCTAAAGCTTCCACTGCTGTTGTGGATGCAGACAAATACAGACAACTGTATTTGGAAATCAAACAGCAAATCGAGGAAATCGACGAACGCTCAAAGGAACAGGTGCGAATGACATCTCGGTTGTATGATATGGAAGTCAGGGGAAGCCGACCAGGTTCATCTGCGAGCAGTAATCAGATGAATCATGtAGATGGGCGGGACTCTCCACGCCAAAGCCCGCACATGTCTGGTGTTCCTGGTCATGGTAGTCCTGTGCCATTTGCTCCAATGATGGGTCATCCACCCCCACCTCCTCCTCCTATGTTTCCAAGAAGACATCCAGCTGAACTAGTAATGACTCCCCCTCGTGCTCCATTTCCTCCACCTGGTCACGTGACTCCCCCAGTAACTTCAACCCCTCAGcAACCACCCAAACCCGATGATGTTGATACCAAGAATACTCCTAAACTTCCTCCACCACCTCCTCTCCCTATGGCAGGATTTGGCCCCAGACCACTCCCCCCAATGATGGGTATGCCCAGATTTCCACTTCCTCCTCCGATGATGCCTCCCACTGGAAAGGGACCAATGCCAAGAGGACCAATGCCGCCTCCTCCCTCGATGTTGAGAGGACCTCCGCCACCTCCAATGCAAGGCCCAAGGCCATCACCTTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003473 (this species only)

Pfam domain

No Pfam domain signature was detected for g8172.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for g8172.t1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR34707 all species →	VIMENTIN-TYPE INTERMEDIATE FILAMENT-ASSOCIATED COILED-COIL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0045098 all species →	Cellular Component	type III intermediate filament	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23704	MIA3, TANGO1; transport and golgi organization protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8172.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

169.1Max TPM

76.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	80.34	169.09
whole organisms · low pH treatment	15	15	70.61	151.29
whole organisms · extra low pH treatment pH treatment	12	12	76.16	163.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	169.09
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	161.87
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	157.05
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	149.93
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	142.64
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	93.38
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	93.06
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	88.82
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	75.18
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	69.37
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	67.39
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	64.83
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	60.77
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	51.08
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	45.93
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	43.57
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	43.21
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	40.20
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	26.38
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	24.73
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	18.65
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	151.29
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	150.67
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	144.16
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	130.85
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	88.69
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	76.48
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	46.56
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	45.24
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	43.35
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	41.33
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	41.21
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	35.78
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	25.05
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	21.39
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	17.09
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	163.20
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	152.24
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	147.96
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	113.84
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	100.81
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	43.52
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	43.33
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	39.44
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	39.34
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	36.48
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	19.27
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	14.50

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.