Gene detail

Detailed information of g8208.t1 in Montipora capitata

Genomic Location: Sc0000198:250691...299564
NR annotation: KAJ7365862.1, Cytosolic carboxypeptidase 1 [Desmophyllum pertusum]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8208.t1

atgagcaagtccaactccaaggggagtagtgcgaggataggcaccttacttgaacagctgcaaaaactgtgtcttgctggttctgacgccaaacatgaacaagaaaaggcagatattgaacagttacgctacgtgacgagcaaaatccagcaacttttatcctcgcaagagaaatgccgcaaagatctaactaccaagtttgcagatggtctttccactttacttgtggtactagagatgtcagtagatactcaacttacattaaacatactgggttgcctttgtgaattgcttacaacaggtaaacgagccgctgttctggtagcaaagggtactgtggacattattttgcgagtaattgtgaacacaagcaaagaagcttctgtttgtgaggagatactgttgctgagccatgtcatcttgaccaaagtaggacccaaagatcgtaagctgtgtgtcaaggctcgattaacaggggctctgcaggttaccatgaatctcataaagaataacacaacattcttcaaagtccttcaacctgctttacaagttcttaaactgtactctgctaattctgtcaattgtaatgctcttgccaagttgggggctgttaatgtcttgtttagagttatcaccagctgtggtcataaaagggttatctgtttaaagttagtactggagatcattgcaactttggtaaaatcaaaaagctgtgcttcaaaagctgttagctttggggctgttccagtgcttttgcagttgttttgtgattggcagagaactgatcatcaccatagacaagcaaacatcagaaaagctatcctaaatgtcatcaagaacattacactgtcaagggctggcaagaaagcatttatacaagctgatggtatcaagactctatatacttcatcactggaaacattagaatgtcgtgaacttgagggggtaaacaacctaagcagccaaatattgcggaggtgtttccccaccaataaacttccagtatcgtccttgtcatcgcctttagcttttgctctgttggatttggacagtgctgggaattcttcagccgaggatctacttgatgatagtggagaaggtgaatcatcagaaattgaatcggaagatgatgatgatgaaagcggcagcactagtcaagaggataaagaaagttgtgcaaagacagaaaagcttgatagcaatagcactagcaatgttgataagcagaccaaggccaaaccaagagatgatctggctatgtatgaaaagttctttccagaattgtttgaacttcaggttgaagatgatgagccagtggaagatgaacattttgtttcctacccaatagtgattccaacagctgcagaagaaccattgtcaacctcgccaacaggacttagccagctgttgagtcaacaggactcaaggaattttgaaagcccaccctctcaatctaaaggcagccagcccaagacacaggccataccaacgcaagagaagcttgtagagaaacaaaaacctggccatactgaaaatcctgctgcgcgtaaaaatggtcaccttcaaagtgtgctgtcgattatcaagacaccctctcctgatatgtatggtcactatccaccactcgaaccagaacccctgggacaaaagaaaacgggactgcagagaacaatgattttcaaggacattgaaaggcagatcaatcctcagagagttataaacagagtcgtttttgacttggacagtttactgaaacaagaaactgagttcgttgagaacagtgtgttgtcagtgcctgctcagcagatgaggcaaactcgtaaagtcagtaacaccagcatgtctgaaggtgaaaggtcatctccggaagagacagccagaccacttaagtttgaatcgaggtttgaaagtggaaatctacgcaaagctattcaggtccgtgactatgagtatgatttggtgctgaatccagacataaactgcaagcatcatcaccagtggtttttctttgaggtcagcaacatggaaggtgaaattccatacaaatttaacattgttaattgtgaaaaaattaacagtcagtttaattttggaatgcagcccgtaatgtattccactttagaggcacaggaaggaagagcaggctgggtcaggacaggaacgaatgtttgctattacagaaattactttacacggagtcgcgaggccaccggtggacagggaggcaaaacctattacacttccaccttcactgtatcattcccacacactcaagatgcgtgttattttgcttatcattatccatacaccttcaccatgttgcagagtcacttgtcacggttagagtcatctttaaacaccagtgacatttattatcgccgcatgacactttgtgacagtttagcgggaaatccgtgcgatgtcattactatcacagcacagccaagacgacgagacgccaacactctagagatgcttaagagcagaccttatatatttctcaccagtcgagttcatcccggcgagagcaattcaagttgggttatgaaaggggtgttagatttccttatgagtaacttttatacagcccgtcgccttcgggaaactttcattttcaagattgtacccatgcttaacatggatggcgttatcaatggctgccatcgatgctcgttgtctggcgatgatttaaacaggcgctggatctctcccagtatgctactccatcctacaatttatcatgtgaaagggctgttgttgtatttacagtcgatagaaaagacacctttggtttattgtgactttcacggccattcacgaaagaagaatgtatttatgtatggttgtagtactgtagctacaatggctgccgctggatcaccgggttcaggtgacgtggatagtgaattgattgactcagtgagggagagagtaacagagttatcgggttcggattccaccagtagcatggatccggctgatttggatgaagatcccggatataggacattaccgcgggttcttcacaacatagcgcctgccttctctctgggcagctgcagctttattgtcgaacaatccaaagaatcaactgctagagttgttgtttggagagagattggagttgtcagaagctatacgatggagactacatacagtggctgcgatcaaggaccatacaagggttatcatgtgggaacaagggagttagaggaaatgggtcggtttttttgtgctgggctgcttcgtgtcggtcgctcatatttctaccgcaacagtaatcacggaaaggcaaacgatagcgcgagtgaatcacctactgccgatagctcatggatacgcacaagcgagctttttgttccttgtgagcttgttagcagtggagtagtggtttag

Transcript

g8208.t1

ATGAGCAAGTCCAACTCCAAGGGGAGTAGTGCGAGGATAGGCACCTTACTTGAACAGCTGCAAAAACTGTGTCTTGCTGGTTCTGACGCCAAACATGAACAAGAAAAGGCAGATATTGAACAGTTACGCTACGTGACGAGCAAAATCCAGCAACTTTTATCCTCGCAAGAGAAATGCCGCAAAGATCTAACTACCAAGTTTGCAGATGGTCTTTCCACTTTACTTGTGGTACTAGAGATGTCAGTAGATACTCAACTTACATTAAACATACTGGGTTGCCTTTGTGAATTGCTTACAACAGGTAAACGAGCCGCTGTTCTGGTAGCAAAGGGTACTGTGGACATTATTTTGCGAGTAATTGTGAACACAAGCAAAGAAGCTTCTGTTTGTGAGGAGATACTGTTGCTGAGCCATGTCATCTTGACCAAAGTAGGACCCAAAGATCGTAAGCTGTGTGTCAAGGCTCGATTAACAGGGGCTCTGCAGGTTACCATGAATCTCATAAAGAATAACACAACATTCTTCAAAGTCCTTCAACCTGCTTTACAAGTTCTTAAACTGTACTCTGCTAATTcTGTCAATTGTAATGCTCTTGCCAAGTTGGGGGCTGTTAATGTCTTGTTTAGAGTTATCACCAGCTGTGGTCATAAAAGGGTTATCTGTTTAAAGTTAGTACTGGAGATCATTGCAACTTTGGTAAAATCAAAAAGCTGTGCTTCAAAAGCTGTTAGCTTTGGGGCTGTTCCAGTGCTTTTGCAGTTGTTTTGTGATTGGCAGAGAACTGATCATCACCATAGACAAGCAAACATCAGAAAAGCTATCCTAAATGTCATCAAGAACATTACACTGTCAAGGGCTGGCAAGAAAGCATTTATACAAGCTGATGGTATCAAGACTCTATATACTTCATCACTGGAAACATTAGAATGTCGTGAACTTGAGGGGGTAAACAACCTAAGCAGCCAAATATTGCGGAGGTGTTTCCCCACCAATAAACTTCCAGTATCGTCCTTGTCATCGCCTTTAGCTTTTGCTCTGTTGGATTTGGACAGTGCTGGGAATTCTTCAGCCGAGGATCTACTTGATGATAGTGGAGAAGGTGAATCATCAGAAATTGAATcggaagatgatgatgatgaaagcgGCAGCACTAGTCAAGAGGATAAAGAAAGTTGTGCAAAGACAGAAAAGCTTGATAGCAATAGCACTAGCAATGTTGATAAGCAGACCAAGGCCAAACCAAGAGATGATCTGGCTATGTATGAAAAGTTCTTTCCAGAATTGTTTGAACTTCAGGTTGAAGATGATGAGCCAGTGGAAGATGAACATTTTGTTTCCTACCCAATAGTGATTCCAACAGCTGCAGAAGAACCATTGTCAACCTCGCCAACAGGACTTAGCCAGCTGTTGAGTCAACAGGACTCAAGGAATTTTGAAAGCCCACCCTCTCAATCTAAAGGCAGCCAGCCCAAGACACAGGCCATACCAACGCAAGAGAAGCTTGTAGAGAAACAAAAACCTGGCCATACTGAAAATCCTGCTGCGCGTAAAAATGGTCACCTTCAAAGTGTGCTGTCGATTATCAAGACACCCTCTCCTGATATGTATGGTCACTATCCACCACTCGAACCAGAACCCCTGGGACAAAAGAAAACGGGACTGCAGAGAACAATGATTTTCAAGGACATTGAAAGGCAGATCAATCCTCAGAGAGTTATAAACAGAGTCGTTTTTGACTTGGACAGTTTACTGAAACAAGAAACTGAGTTCGTTGAGAACAGTGTGTTGTCAGTGCCTGCTCAGCAGATGAGGCAAACTCGTAAAGTCAGTAACACCAGCATGTCTGAAGGTGAAAGGTCATCTCCGGAAGAGACAGCCAGACCACTTAAGTTTGAATCGAGGTTTGAAAGTGGAAATCTACGCAAAGCTATTCAGGTCCGTGACTATGAGTATGATTTGGTGCTGAATCCAGACATAAACTGCAAGCATCATCACCAGTGGTTTTTCTTTGAGGTCAGCAACATGGAAGGTGAAATTCCATACAAATTTAACATTGTTAATTGTGAAAAAATTAACAGTCAGTTTAATTTTGGAATGCAGCCCGTAATGTATTCCACTTTAGAGGCACAGGAAGGAAGAGCAGGCTGGGTCAGGACAGGAACGAATGTTTGCTATTACAGAAATTACTTTACACGGAGTCGCGAGGCCACCGGTGGACAGGGAGGCAAAACCTATTACACTTCCACCTTCACTGTATCATTCCCACACACTCAAGATGCGTGTTATTTTGCTTATCATTATCCATACACCTTCACCATGTTGCAGAGTCACTTGTCACGGTTAGAGTCATCTTTAAACACCAGTGACATTTATTATCGCCGCATGACACTTTGTGACAGTTTAGCGGGAAATCCGTGCGATGTCATTACTATCACAGCACAGCCAAGACGACGAGACGCCAACACTCTAGAGATGCTTAAGAGCAGACCTTATATATTTCTCACCAGTCGAGTTCATCCCGGCGAGAGCAATTCAAGTTGGGTTATGAAAGggGTGTTAGATTTCCTTATGAGTAACTTTTATACAGCCCGTCGCCTTCGggaaactttcattttcaagattGTACCCATGCTTAACATGGATGGCGTTATCAATGGCTGccATCGATGCTCGTTGTCTGGCGATGATTTAAACAGGCGCTGGATCTCTCCCAGTATGCTACTCCATCCTACAATTTATCATGTGAAAGGGCTGTTGTTGTATTTACAGTCGATAGAAAAGACACCTTTGGTTTATTGTGACTTTCACGGCCATTCACGAAAGAAGAATGTATTTATGTATGGTTGTAGTACTGTAGCTACAATGGCTGCCGCTGGATCACCGGGTTCAGGTGACGTGGATAGTGAATTGATTGACTCAGTGAGGGAGAGAGTAACAGAGTTATCGGGTTCGGATTCCACCAGTAGCATGGATCCGGCTGATTTGGATGAAGATCCCGGATATAGGACATTACCGCGGGTTCTTCACAACATAGCGCCTGCCTTCTCTCTGGGCAGCTGCAGCTTTATTGTCGAACAATCCAAAGAATCAACTGCTAGAGTTGTTGTTTGGAGAGAGATTGGAGTTGTCAGAAGCTATACGATGGAGACTACATACAGTGGCTGCGATCAAGGACCATACAAGGGTTATCATGTGGGAACAAGGGAGTTAGAGGAAATGGGTCGGTTTTTTTGTGCTGGGCTGCTTCGTGTCGGTCGCTCATATTTCTACCGCAACAGTAATCACGGAAAGGCAAACGATAGCGCGAGTGAATCACCTACTGCCGATAGCTCATGGATACGCACAAGCGAGCTTTTTGTTCCTTGTGAGCTTGTTAGCAGTGGAGTAGTGGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q641K1	Cytosolic carboxypeptidase 1 OS=Mus musculus OX=10090 GN=Agtpbp1 PE=1 SV=2
E1C3P4	Cytosolic carboxypeptidase 1 OS=Gallus gallus OX=9031 GN=AGTPBP1 PE=3 SV=1
Q9UPW5	Cytosolic carboxypeptidase 1 OS=Homo sapiens OX=9606 GN=AGTPBP1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003584 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00246 all species →	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan
PF18027 all species →	Pepdidase_M14_N	Cytosolic carboxypeptidase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000834 all species →	Domain	Peptidase M14, carboxypeptidase A	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033852 all species →	Domain	Cytosolic aminopeptidase 1/4	Interproscan
IPR050821 all species →	Family	Cytosolic carboxypeptidase	Interproscan
IPR040626 all species →	Domain	Cytosolic carboxypeptidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12756 all species →	CYTOSOLIC CARBOXYPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004181 all species →	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0035610 all species →	Biological Process	protein side chain deglutamylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23435	AGTPBP1, CCP1; cytosolic carboxypeptidase protein 1	EC:3.4.17.24	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8208.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

281.6Max TPM

125.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	120.35	281.60
whole organisms · low pH treatment	15	15	132.61	248.95
whole organisms · extra low pH treatment pH treatment	12	12	127.12	245.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	281.60
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	252.92
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	210.61
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	201.29
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	200.04
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	197.29
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	196.92
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	182.49
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	150.57
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	121.14
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	120.85
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	66.31
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	63.20
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	51.07
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	45.79
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	43.43
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	43.13
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	36.43
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	25.18
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	18.67
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	18.37
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	248.95
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	231.68
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	212.43
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	199.91
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	191.31
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	172.07
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	151.10
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	151.06
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	126.64
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	79.33
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	76.28
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	60.05
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	32.31
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	30.64
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	25.37
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	245.72
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	230.48
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	200.97
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	180.21
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	149.31
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	142.31
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	128.18
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	75.87
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	54.94
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	41.43
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	40.23
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	35.79

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.