Gene detail

Detailed information of g824.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_019639861.1, PREDICTED: NEDD8-conjugating enzyme Ubc12 [Branchiostoma belcheri]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q6DCZ9	NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis OX=8355 GN=ube2m PE=2 SV=1
A3KN22	NEDD8-conjugating enzyme Ubc12 OS=Bos taurus OX=9913 GN=UBE2M PE=2 SV=1
P61081	NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens OX=9606 GN=UBE2M PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E2\|UBC\|UBC
Ubiquitin Family	UBD\|UBC-like\|UBC

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF00246	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan
PF18027	Pepdidase_M14_N	Cytosolic carboxypeptidase N-terminal domain	Domain	Interproscan
PF00452	Bcl-2	Apoptosis regulator proteins, Bcl-2 family	Family	Interproscan
PF00071	Ras	Ras family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00089	Trypsin	Trypsin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR000608	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR050113	Family	Ubiquitin-conjugating enzyme	Interproscan
IPR023313	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR000834	Domain	Peptidase M14, carboxypeptidase A	Interproscan
IPR034286	Domain	Cytosolic carboxypeptidase-like protein 5 catalytic domain	Interproscan
IPR040626	Domain	Cytosolic carboxypeptidase, N-terminal	Interproscan
IPR050821	Family	Cytosolic carboxypeptidase	Interproscan
IPR002475	Family	Bcl2-like	Interproscan
IPR036834	Homologous_superfamily	Bcl-2-like superfamily	Interproscan
IPR046371	Domain	Bcl-2, Bcl-2 homology region 1-3	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR045075	Family	Pre-mRNA-splicing factor Syf1-like	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR042099	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR043504	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001254	Domain	Serine proteases, trypsin domain	Interproscan
IPR033116	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR009003	Homologous_superfamily	Peptidase S1, PA clan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24067	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan
PTHR12756	CYTOSOLIC CARBOXYPEPTIDASE	Interproscan
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan
PTHR46704	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR47018	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR11246	PRE-MRNA SPLICING FACTOR	Interproscan
PTHR22754	DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED	Interproscan
PTHR24252	ACROSIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004181	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0035608	Biological Process	protein deglutamylation	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0000245	Biological Process	spliceosomal complex assembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0071007	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071014	Cellular Component	post-mRNA release spliceosomal complex	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15208	SNAPC1; snRNA-activating protein complex subunit 1	-	Transporters	ko02000	deepkoala
			Ubiquitin system	ko04121	deepkoala
			Peptidases and inhibitors	ko01002	deepkoala
			Transcription machinery	ko03021	deepkoala