Detailed information of g826.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_022790430.1, uncharacterized protein LOC111329928 [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q4V7B8RING finger protein 44 OS=Rattus norvegicus OX=10116 GN=Rnf44 PE=2 SV=1
Q3UHJ8RING finger protein 44 OS=Mus musculus OX=10090 GN=Rnf44 PE=2 SV=1
Q7L0R7RING finger protein 44 OS=Homo sapiens OX=9606 GN=RNF44 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan
PF14617CMS1U3-containing 90S pre-ribosomal complex subunitFamilyInterproscan
PF16418CNOT1_HEATCCR4-NOT transcription complex subunit 1 HEAT repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032704FamilyProtein Cms1Interproscan
IPR040398FamilyCCR4-NOT transcription complex subunit 1Interproscan
IPR032194DomainCCR4-NOT transcription complex subunit 1, HEAT repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22955RETROTRANSPOSONInterproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR46171GH10160PInterproscan
PTHR24030PROTEIN CMSS1Interproscan
PTHR13162CCR4-NOT TRANSCRIPTION COMPLEXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0030015Cellular ComponentCCR4-NOT core complexInterproscan
GO:0060090Molecular Functionmolecular adaptor activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10325ASB3; ankyrin repeat and SOCS box protein 3-Ubiquitin systemko04121deepkoala

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