Detailed information of g827.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH1266220.1, MFHAS1 [Branchiostoma lanceolatum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5S007Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2
Q5S006Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q3UHC2Leucine-rich repeat serine/threonine-protein kinase 1 OS=Mus musculus OX=10090 GN=Lrrk1 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyFork_head

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF00250ForkheadForkhead domainDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF13855LRR_8Leucine rich repeatRepeatInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF08477RocRas of Complex, Roc, domain of DAPkinaseDomainInterproscan
PF16095CORC-terminal of Roc, COR, domainFamilyInterproscan
PF12842DUF3819CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819DomainInterproscan
PF16417CNOT1_TTP_bindCCR4-NOT transcription complex subunit 1 TTP binding domainRepeatInterproscan
PF04054Not1CCR4-Not complex component, Not1RepeatInterproscan
PF16415CNOT1_CAF1_bindCCR4-NOT transcription complex subunit 1 CAF1-binding domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR050327FamilyProton-linked Monocarboxylate TransporterInterproscan
IPR001766DomainFork head domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR030456Conserved_siteFork head domain conserved site 2Interproscan
IPR050211FamilyForkhead box domain-containing proteinInterproscan
IPR047388DomainProtein fork head-like, forkhead domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR020859DomainRoc domainInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR003591RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR051420FamilySer/Thr Protein Kinases with Diverse Regulatory RolesInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR032171DomainC-terminal of Roc (COR) domainInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR039034FamilyInositol 3,4-bisphosphate 4-phosphataseInterproscan
IPR038535Homologous_superfamilyCCR4-NOT subunit 1, TTP binding domain superfamilyInterproscan
IPR024557DomainCCR4-NOT transcription complex subunit 1, domain 4Interproscan
IPR032193DomainCCR4-NOT transcription complex subunit 1, TTP binding domainInterproscan
IPR040398FamilyCCR4-NOT transcription complex subunit 1Interproscan
IPR007196DomainCCR4-Not complex component, Not1, C-terminalInterproscan
IPR032191DomainCCR4-NOT transcription complex subunit 1, CAF1-binding domainInterproscan
IPR009011Homologous_superfamilyMannose-6-phosphate receptor binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22955RETROTRANSPOSONInterproscan
PTHR11360MONOCARBOXYLATE TRANSPORTERInterproscan
PTHR11829FORKHEAD BOX PROTEINInterproscan
PTHR48005LEUCINE RICH REPEAT KINASE 2Interproscan
PTHR12187AGAP000124-PAInterproscan
PTHR13162CCR4-NOT TRANSCRIPTION COMPLEXInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016021Cellular ComponentmembraneInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016316Molecular Functionphosphatidylinositol-3,4-bisphosphate 4-phosphatase activityInterproscan
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0030015Cellular ComponentCCR4-NOT core complexInterproscan
GO:0060090Molecular Functionmolecular adaptor activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08035FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta-Exosomeko04147deepkoala
Messenger RNA biogenesisko03019deepkoala
Transcription factorsko03000deepkoala

TOP