Gene detail

Detailed information of g8293.t2 in Acropora digitifera

Genomic Location: chr4Alt:6774912...6788769
NR annotation: CAH3031816.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8293.t2

ATGAATGATATTCCTGTGCAGCCAAATTCTGCAAGCCAATTGTCTCAGCTTAAATTCACAATACTTAAAGCTTCACTGAAGGAACAGTCTGGCTGGTTTACTAAGGGAGATCCTTATGTGAAACTGGTAGTTGATGGAAAACAACCTTCAAAGAAAACTGAAGCAGCACGAAAGACATGGGAGCCATTTTGGGATGAGGAATTTACAGTACTTGTCACACCATATAGTGTGCTAGAATTGGAAGTCAGCAATAAATTTTCTATCAAGAGTGATGTTCCACTAGGAAATGCCACAGTTCAGCTGAATGATCTTTTGCATTCCAATCATGGAAAATTGGAAAATTACAATTTGAAACTTAATATTGTCCTGGACAAGAATGGGTCTCCCTGTCAAACAGGGGTGTTGGAGGTTGTTCTTGATGGAATGAGTGTGAACATGAGGCATTTTCCTCGGAGAGGACCTTCACAAACACCAACCCCTGTTGCCAAAAGTCGTTCTTCCTCCGGTGCTGCCTCAGGAACACCCTCGCCAAATGGCCATCCACCAAATTCCAGACATTCACAGCGGCCTAATGAAGGAGAGGTTCAGAGGCGACATCCCAGGCAGTCTTCATCTCGACAGAGACCTGTGAGTACAGGAGCAATGGCAACAGCAGGTGCAAATGCAAGCACACAGAATATATCACCACGAGTACATAATAGGAGTAGTGTGACAACATCCACTCCCCAAGCCCCACCTCCACCTCCACCAGCTGTGAATAATGCTAACTCTTCATCCACACCAACCACACAACAGAGACAAGCAAATGAGGAGCCTCTTCCACCTGGTTGGGAGCAACGAGTAGATCCACACAGTAGGATTTATTATGTCGATCACAACACTCGTACAACTGCCTGGGAAAGACCTCAGCCTCTACCCCCTGGCTGGGAGAGAAGAACAGATCAACGAGGAAGGACTTACTATGTTGATCACAACACAAGAACAACCACCTGGCAGCGTCCAACAGCAGAAACAGTTAGAAATTATGAAAACTGGCAGATGCAAACTAGAGCACTAATAAACTCAGAGAGGCAAAACTTCCAACAGCGCTTCCTTCTGCCGATGGCCTGTTCACCTGAAGCCGATCAGCTTGGTGCCCTCCCAAGTGGCTGGGAGAAAAGAGTGGAAGGCAATGGAAGAGTCTACTTTGTCAACCATAACACAAGAGCAACCCAATGGGAAGATCCTCGAACTCAAGTCATGGTGGGTTCAGACTCACCCCTTCCAAGTGGCTGGGAGATGAGGTACACTAACGAGGGTATTCCTTACTTTGTTGACCATAACACACGCACCACAACGTTCAACGATCCAAGAACAGGAGTTGCTGTTGGAATGAAAGGTGCTGCTGGGGGCCCTGCCTATGAAAGAAGCTTTAGGTGGAAAGTTGGGCAATTCAGACATCTTTGCCAGTCCAATTCTCTTCCAAGTCATGTGAAAATCACAGTGAACAGGACTAACATCTTTGAGGACTCGTTCCAGCAGGTGATGCGGTATGCCCCACACGACTTGCGTCGCAGGCTTTATATTATTTTTAAAGGAGAAGAAGGCTTAGATTATGGCGGAGTTGCAAGAGAGTGGTTCTTTTTGCTTTCACACGAAGTGCTGAATCCGATGTACTGCTTGTTTGAATATGCCAACAAAAGTAATTACAGCCTTCAAATCAATCCAGCATCGTACGTGAATCCTGATCATTTACAGTACTTCAGATTCATTGGTCGTTTGATCGCTATGGCTCTTTATCACGGAAAGTTCATTGACCGAGGATTCACTCTTCCTTTCTACAAGAGGATGTTGAACAAGAAGCAAACGATGAAAGATCTAGAGTCAATTGACCCGGAGTTTTATAACTCGCTGGTTTGGATCAAGGATAACAATATAGAAGAGTGCGGTCTAGACATGGAATTTACAGTGGATATGGAATTGCTAGGAAAAATAACTTCACACGATTTAAAACCCAATGGATCAGAAATCAAGGTCACCGAGGAAAATAAAGAGGAATACCTGTCGCTTATGACCCAGTGGAGGTTTAATCGAGGTATTGAAGAGCAAACCAAAGCTTTCCTGGATGGATTCAATGAAGTGGTTCCTTTGCATTGGTTGCAATTCTTTGATGAGAAAGAAATCGAGTTGATGTTATGTGGAATGCAAGAGATTGATCTTGACGATTGGCAGGCCAACGCTGTTTATCGTCACTACACCAGAAACAGCAAACAGGTCACGTGGTTTTGGCAGGCGCTGCGTTCCTTTGACAATGAGAAAAGAACTCGATTGTTACAGTTTGTGACCGGAACGTGTCGTCTTCCAGTAGGTGGCTTTGCCGAGCTCATGGGGAGCAACGGGCCACAAAAATTTTGTATTGAAAAGGTTGGCAAGGAGACGTGGCTTCCGCGTAGCCACACTTGTTTTAACCGCCTGGATCTTCCACCCTACAAGAGCTTCGAACAGTTAGTTGAAAAGCTCACCTTTGCAATTGAAGAAACAGAGGGATTTGCACAAGAATGA

Transcript

chr4Alt.g8293.t2

ATGTGAAATTATTTCCTCAAAGTGCATATGATACCCTTTTTTTTTTTTAATTGTTGAAAGTTTAATATCAGTCAAAAAGTGACTGCAGTAGTGTCATGAATGATATTCCTGTGCAGCCAAATTCTGCAAGCCAATTGTCTCAGCTTAAATTCACAATACTTAAAGCTTCACTGAAGGAACAGTCTGGCTGGTTTACTAAGGGAGATCCTTATGTGAAACTGGTAGTTGATGGAAAACAACCTTCAAAGAAAACTGAAGCAGCACGAAAGACATGGGAGCCATTTTGGGATGAGGAATTTACAGTACTTGTCACACCATATAGTGTGCTAGAATTGGAAGTCAGCAATAAATTTTCTATCAAGAGTGATGTTCCACTAGGAAATGCCACAGTTCAGCTGAATGATCTTTTGCATTCCAATCATGGAAAATTGGAAAATTACAATTTGAAACTTAATATTGTCCTGGACAAGAATGGGTCTCCCTGTCAAACAGGGGTGTTGGAGGTTGTTCTTGATGGAATGAGTGTGAACATGAGGCATTTTCCTCGGAGAGGACCTTCACAAACACCAACCCCTGTTGCCAAAAGTCGTTCTTCCTCCGGTGCTGCCTCAGGAACACCCTCGCCAAATGGCCATCCACCAAATTCCAGACATTCACAGCGGCCTAATGAAGGAGAGGTTCAGAGGCGACATCCCAGGCAGTCTTCATCTCGACAGAGACCTGTGAGTACAGGAGCAATGGCAACAGCAGGTGCAAATGCAAGCACACAGAATATATCACCACGAGTACATAATAGGAGTAGTGTGACAACATCCACTCCCCAAGCCCCACCTCCACCTCCACCAGCTGTGAATAATGCTAACTCTTCATCCACACCAACCACACAACAGAGACAAGCAAATGAGGAGCCTCTTCCACCTGGTTGGGAGCAACGAGTAGATCCACACAGTAGGATTTATTATGTCGATCACAACACTCGTACAACTGCCTGGGAAAGACCTCAGCCTCTACCCCCTGGCTGGGAGAGAAGAACAGATCAACGAGGAAGGACTTACTATGTTGATCACAACACAAGAACAACCACCTGGCAGCGTCCAACAGCAGAAACAGTTAGAAATTATGAAAACTGGCAGATGCAAACTAGAGCACTAATAAACTCAGAGAGGCAAAACTTCCAACAGCGCTTCCTTCTGCCGATGGCCTGTTCACCTGAAGCCGATCAGCTTGGTGCCCTCCCAAGTGGCTGGGAGAAAAGAGTGGAAGGCAATGGAAGAGTCTACTTTGTCAACCATAACACAAGAGCAACCCAATGGGAAGATCCTCGAACTCAAGTCATGGTGGGTTCAGACTCACCCCTTCCAAGTGGCTGGGAGATGAGGTACACTAACGAGGGTATTCCTTACTTTGTTGACCATAACACACGCACCACAACGTTCAACGATCCAAGAACAGGAGTTGCTGTTGGAATGAAAGGTGCTGCTGGGGGCCCTGCCTATGAAAGAAGCTTTAGGTGGAAAGTTGGGCAATTCAGACATCTTTGCCAGTCCAATTCTCTTCCAAGTCATGTGAAAATCACAGTGAACAGGACTAACATCTTTGAGGACTCGTTCCAGCAGGTGATGCGGTATGCCCCACACGACTTGCGTCGCAGGCTTTATATTATTTTTAAAGGAGAAGAAGGCTTAGATTATGGCGGAGTTGCAAGAGAGTGGTTCTTTTTGCTTTCACACGAAGTGCTGAATCCGATGTACTGCTTGTTTGAATATGCCAACAAAAGTAATTACAGCCTTCAAATCAATCCAGCATCGTACGTGAATCCTGATCATTTACAGTACTTCAGATTCATTGGTCGTTTGATCGCTATGGCTCTTTATCACGGAAAGTTCATTGACCGAGGATTCACTCTTCCTTTCTACAAGAGGATGTTGAACAAGAAGCAAACGATGAAAGATCTAGAGTCAATTGACCCGGAGTTTTATAACTCGCTGGTTTGGATCAAGGATAACAATATAGAAGAGTGCGGTCTAGACATGGAATTTACAGTGGATATGGAATTGCTAGGAAAAATAACTTCACACGATTTAAAACCCAATGGATCAGAAATCAAGGTCACCGAGGAAAATAAAGAGGAATACCTGTCGCTTATGACCCAGTGGAGGTTTAATCGAGGTATTGAAGAGCAAACCAAAGCTTTCCTGGATGGATTCAATGAAGTGGTTCCTTTGCATTGGTTGCAATTCTTTGATGAGAAAGAAATCGAGTTGATGTTATGTGGAATGCAAGAGATTGATCTTGACGATTGGCAGGCCAACGCTGTTTATCGTCACTACACCAGAAACAGCAAACAGGTCACGTGGTTTTGGCAGGCGCTGCGTTCCTTTGACAATGAGAAAAGAACTCGATTGTTACAGTTTGTGACCGGAACGTGTCGTCTTCCAGTAGGTGGCTTTGCCGAGCTCATGGGGAGCAACGGGCCACAAAAATTTTGTATTGAAAAGGTTGGCAAGGAGACGTGGCTTCCGCGTAGCCACACTTGTTTTAACCGCCTGGATCTTCCACCCTACAAGAGCTTCGAACAGTTAGTTGAAAAGCTCACCTTTGCAATTGAAGAAACAGAGGGATTTGCACAAGAATGACCAGCACTTAGAGATAATCTCAGCTTCATGATCAATTCGCCTTAGTACATAAAAACACGAAAAATGAAATGCGTAATTACCCTCCACTCAACTGTGAGACCATCTACGGCATGATTTGGTCTTGCTTTGAGATTGGGGAGGGAAGGGGTGCGGCACGCTACACTTGAACTTCATGTAAGCAATCATGATAACACGGTTGAGTTCTGAGGTCATAGAATATTTCTTAGGGGCATAAAAGCATCATACAAAGCGTTCTCTTCGCCAACCATATGAAGAGAAAAAGTCTTCAATGGTAACGGGAGGTAAAAAGTATTGTTATTAATTTAGATAGTCGCTTTATTTTTATCTTTATTTCTTGCAGAACAGCTCTGGTTAAAATAACTTTGTTGTGTCGTGAAATGACGCTGTGTGAATTTTAATAAAGGAAGCCTGCGTGGTAGAATGATTGACATACACGTAGCATGTAGCTTGTTAAAAACAATGTTTTGCCCATCTTAGATGAGAAATTAGACTTCACGCACGCGTAGGATCAACTATTTTGTATGACTACGAAGAAATATTTCTAGTGTAATAATAATGATGATCGGTTTCGGAATTGAAACTCAAAGTCCTTTCATTTCGAGGGGCGCTTAGGGTTGGGTCGACTTGGTGTGATAGTGTATGATTGTTGATCACATCTCTGTATCATAGCTCCAACCACTGGCATAAACAATCTTACTATAGTTGGAATGAATAAAAGGAAATTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DBH0	NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus OX=10090 GN=Wwp2 PE=1 SV=1
O00308	NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens OX=9606 GN=WWP2 PE=1 SV=2
Q8C863	E3 ubiquitin-protein ligase Itchy OS=Mus musculus OX=10090 GN=Itch PE=1 SV=2

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR050409 all species →	Family	E3 ubiquitin-protein ligase	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR024928 all species →	Family	E3 ubiquitin-protein ligase, SMURF1 type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11254 all species →	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05633	WWP1, AIP5; NEDD4-like E3 ubiquitin-protein ligase WWP1	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.