Gene detail

Detailed information of g83.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: VDB00570.1, Superfamily I DNA and RNA helicases and helicase subunits [Olavius algarvensis spirochete endosymbiont]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKD7	Putative helicase MOV-10 OS=Gallus gallus OX=9031 GN=MOV10 PE=2 SV=1
Q09449	Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis elegans OX=6239 GN=C05C10.2 PE=3 SV=2
Q8R151	NFX1-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Znfx1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000008 (this species only)
Orthogroup (gene family)	OG0000045 (this species only)
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0000155 (this species only)
Orthogroup (gene family)	OG0000828 (this species only)
Orthogroup (gene family)	OG0002894 (this species only)
Orthogroup (gene family)	OG0003151 (this species only)
Orthogroup (gene family)	OG0005684 (this species only)
Orthogroup (gene family)	OG0012040 (this species only)
Orthogroup (gene family)	OG0013018 (this species only)
Orthogroup (gene family)	OG0020552 (this species only)
Orthogroup (gene family)	OG0032557 (this species only)
Orthogroup (gene family)	OG0172300 (this species only)
Orthogroup (gene family)	OG0173439 (this species only)
Orthogroup (gene family)	OG0173867 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF21787 all species →	TNP-like_RNaseH_N	TNP-like, RNase H N-terminal domain	Domain	Interproscan
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF04129 all species →	Vps52_CC	Vps52/Sac2 family, coiled-coil	Repeat	Interproscan
PF20655 all species →	Vps52_C	Vps52, C-terminal	Repeat	Interproscan
PF03184 all species →	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF13019 all species →	Sde2_N_Ubi	Silencing defective 2 N-terminal ubiquitin domain	Domain	Interproscan
PF13650 all species →	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF05821 all species →	NDUF_B8	NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR048365 all species →	Domain	Transposable element P transposase-like, RNase H domain, N-terminal	Interproscan
IPR051436 all species →	Family	Autophagy-related EPG5	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR048319 all species →	Domain	Vps52, coiled-coil domain	Interproscan
IPR007258 all species →	Family	Vps52	Interproscan
IPR048361 all species →	Domain	Vps52, C-terminal	Interproscan
IPR004875 all species →	Domain	DDE superfamily endonuclease domain	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR051421 all species →	Family	RNA Processing and DNA Damage Response Regulator	Interproscan
IPR024974 all species →	Domain	Sde2, N-terminal ubiquitin domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR008699 all species →	Family	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23080 all species →	THAP DOMAIN PROTEIN	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR31139 all species →	ECTOPIC P GRANULES PROTEIN 5 HOMOLOG	Interproscan
PTHR18945 all species →	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan
PTHR14190 all species →	SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52	Interproscan
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan
PTHR12786 all species →	SPLICING FACTOR SF3A-RELATED	Interproscan
PTHR36943 all species →	CCHC-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0097352 all species →	Biological Process	autophagosome maturation	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0005231 all species →	Molecular Function	excitatory extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0030594 all species →	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050877 all species →	Biological Process	nervous system process	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0007041 all species →	Biological Process	lysosomal transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14376	PAP; poly(A) polymerase	EC:2.7.7.19	Messenger RNA biogenesis	ko03019	deepkoala
K18740	EXD1, EGL; exonuclease 3'-5' domain-containing protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala
K20298	VPS52; vacuolar protein sorting-associated protein 52	-	Membrane trafficking	ko04131	deepkoala
K23883	EPG5; ectopic P granules protein 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.