Gene detail

Detailed information of g8302.t2 in Acropora digitifera

Genomic Location: chr4Alt:6860612...6863506
NR annotation: XP_044175028.1, ATP-dependent RNA helicase DEAH12, chloroplastic-like [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr4Alt.g8302.t2

ACGCGGTTGGCCACCTTTTCCCTTCACGGATGATAGGTACAAGTTTAGTAAGGTTTCAACCAGACAGGAAACATCCAGAGCAGATCTTTATGAGGGGACTCCATCCGAGAGCAGGCGAGGAAAACGTTAAGGCTACTATTGAAGGAATGGTACCCTCTGTGAAGATACAAAAGGTTTTTATCCACCGAAAACCAGAGTTTGAAACTACGGATGGGGAGGTTGCATTACAAAAAACATCCATAGAAAAATATTTGCTCGATTTTGCCACGGAGGGGAAATTCAGTGTTTACGTGAGAAAGCCAAAATCAAAGGACTTTGAAGGACAGGCCTATGTGACATTCGAAGACTTTCAGGAAGGTCAAGCAGCCTTGAAAGGTCTCAATGGACGAGCCATTCCAGGTTTTGGGATACTCAACCTGCATTGCAGCCTTTCAACTCTTTTGCTATGCCCCAGAAACGTGTTCATTGTCATCAAAGATGAGCTGGATGCAATTGTGACGGAGGTAAAGCAGAGGTTTGGAACAACGTTTGTGTTGACAAAAGATCAACAGCAAAGCAAAAGGGTTGCCGTCGAGATTCGCAGTGAATGTGCCGACCACTTTATTCGTGTGACAAGTATTGTCAGTGCGATTCTGAATGGAGACGAGATCGATTGTAAAATTTCCAAGGATGTGGAAGTTCTCCTCACAGATTCAGCAAAGAAAGCTATTCAGACTATTCAGAACGAGACAAATACAGTGATAAGCCAAGATTGGCGGAACAAGGTGGTCAGAATCCATGGGCAGCAAGACAAACGAGAAGAAGCAAAGCGTGCTATCAACAAATTTATTGGCGATCTTATTGCAAGCAACAGCCATTTCTGGCAGATCGGGCTTCGGGGACCTGGAATGCCTCGTGGGTTGCTGAAAGCTCTCTTCGAGAGATTTGGTGTTGATTTACATGGTCTGCAAGACATTTCTGGTGTCCAAAACGTCACTGTTGAGTTTCGACGTCATGTTCTCAAGATAATAAGCTCAGATGAGGCTCAGGAGACGATAAAAGGCTTCGTGAATGAATGCTGTGAAAATCTGCCGAAAAACTGCCCTCATCAGGGCGACAACCAAACCCAAAGCCAAGCTCAGTTGGCGTGTGGCATTTGCCTGTGTGACTTGGAGGATACAGATGAGATTTACAGACTTGCTTGCTGTGGCCATGCCTACGACAAGACATGTATTATCCAACAGTTAAAATCTGCTGTGGTTCCACTAAAATGTGTCACAGAAAACTGCGAAGAGCCTGTTGTATGGAAAGATTTTCAGAACCTCCTGAGTCAAAGTGAGAGGAAAAAGCTGCTTATTAGCTCGTTAGATGCGTATGTCAGATGCAATCCCGACTCAGTGAAATACTGTCCAACACCTGACTGTGGAACGGTGTACCGTGTCTCAACCGATGGGAGAAGCCACAAGTGTGGCGCATGCTCCGCAGACATCTGCACTTCGTGCCACACCCAGTCTCACAGAGGTCTAACCTGCGCTATGTTTAAATCAGGGAGAAACGTGGAGGAGGATTTCAAGGAGTGGATGAGGAAAGATCCTAGCAACCGGAAGAACTGTCCTCAATGCAATGCACCAATTGAAAAGAATCAGGGCTGCAATCACATGGAATGTTCACAGTGTAAGGCGCACATGTGTTGGCTGTGTTTGGGAGTATTTCGAACTGGACACGAGGTTTACGATCACCAAAGTCATTGTCCAAATAAGTGATGAGTCCAACTGTGCTAACAGCTTCACCCACACCTTACCAAGGTTGCCAACGTGGGCCCTGGAAAATACCATTGTAACTCAAAGCCTCGGACTTGAATAATTAGCATAATTACTCGCAAAAGTAATGTATTAATATGGTTGTAGAGGTCACCCACATTTTTTACCCGTGATGAATTAACATAATGACATTTACTGTGACTGACTTTTAGAATTGTAGTTACGGTTTGTTTTGTTTTTGATGTTCACAAAAATGTTTACAACTCGCATCAGGATTTTGTGGGTGACGCATTCAATTGAAAAGTGCAGGCAGGTTAAACCACACTTGCACCTTGTGTCAACCAGGCGTGTCAACACTGGTTGTAGAACGAATCATGAAGGTCCTTAACCAGTCCTTCAGCTAATCTTGGTTAGAGCAAATAAGAAAAATTTCGGATGTCGCTTCAAAGGGGAACTGTAGGTACTTTTGATAACCCTCTGAAGGATCTTTAATGATCTTGATTGTTATATAAATAGTGGAATTCCGTGTAAAATCACGACTGTTGACAAGTGGATCTGTAAGTAATAATAGAAGGACGTAAAGGTTGTCTTAAGAATAGAAAGTAGAAAACCTACGTAAGGAAAAGGACAAATCGAGATAAATAGTGAAGGGTTTGTAATAGGGAACGTTTGAAAAGTTCCTCGTCCTTAATTACGTAATTTGTTGGAGAGCATTTCGTGTTAAGTGGACGAATGTCAATTGCCTAAACAGTCTAAACTTTCTACAGAGAAAGTTTTATTATTAGACGCATAGAAGGAGCGTGTGAACAGTGGATAACACGCAGTATTGAAGTAATTTGGTAATTTCTTTTAATGCTTTTCTTTACTGTTATTTTCCTCAACAAACCAATAAGTCACATAAGCAATGACACCAGGAGGCTCAACTGCGGTGAATCTTAAATCACCGCAGATAAGAGTATTTCATTTGGGGTAAACGGATGCCTTTGGCGTAGTAAAGAACAGTTTAACTAATGTGTGAATCATGCCTATATCTTTAAGTGATAGGGCAATATGCAGATTAAACAGTCAGTCCTTATGTACCTGGGTAAGCAACCTTATAAAAGGAATGAAAAGAAAAATGTAAGCTAGCTAGTGAAATTAAACGATTTTATGACGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1K6	E3 ubiquitin-protein ligase ARIH2 OS=Mus musculus OX=10090 GN=Arih2 PE=1 SV=1
O76924	Potential E3 ubiquitin-protein ligase ariadne-2 OS=Drosophila melanogaster OX=7227 GN=ari-2 PE=1 SV=1
Q22431	Potential E3 ubiquitin-protein ligase ariadne-2 OS=Caenorhabditis elegans OX=6239 GN=ari-2 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8302.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.