Detailed information of g8314.t2 in Tripedalia maipoensis

Genomic Location: scaffold_4:52034999...52120994
NR annotation: no NCBI-NR hit recorded
Species abbreviation TMAIP · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16418
all species →
CNOT1_HEATCCR4-NOT transcription complex subunit 1 HEAT repeatDomainInterproscan
PF16415
all species →
CNOT1_CAF1_bindCCR4-NOT transcription complex subunit 1 CAF1-binding domainRepeatInterproscan
PF04054
all species →
Not1CCR4-Not complex component, Not1RepeatInterproscan
PF16417
all species →
CNOT1_TTP_bindCCR4-NOT transcription complex subunit 1 TTP binding domainRepeatInterproscan
PF12842
all species →
DUF3819CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038535
all species →
Homologous_superfamilyCCR4-NOT subunit 1, TTP binding domain superfamilyInterproscan
IPR032194
all species →
DomainCCR4-NOT transcription complex subunit 1, HEAT repeatInterproscan
IPR032191
all species →
DomainCCR4-NOT transcription complex subunit 1, CAF1-binding domainInterproscan
IPR040398
all species →
FamilyCCR4-NOT transcription complex subunit 1Interproscan
IPR007196
all species →
DomainCCR4-Not complex component, Not1, C-terminalInterproscan
IPR032193
all species →
DomainCCR4-NOT transcription complex subunit 1, TTP binding domainInterproscan
IPR024557
all species →
DomainCCR4-NOT transcription complex subunit 1, domain 4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13162
all species →
CCR4-NOT TRANSCRIPTION COMPLEXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000288
all species →
Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0000932
all species →
Cellular ComponentP-bodyInterproscan
GO:0017148
all species →
Biological Processnegative regulation of translationInterproscan
GO:0030015
all species →
Cellular ComponentCCR4-NOT core complexInterproscan
GO:0060090
all species →
Molecular Functionmolecular adaptor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12604CNOT1, NOT1; CCR4-NOT transcription complex subunit 1-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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