Gene detail

Detailed information of g84.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCP5405137.1, Fic family protein [Pseudomonadaceae bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GNG8	PRKR-interacting protein 1 homolog OS=Xenopus laevis OX=8355 GN=prkrip1 PE=2 SV=1
Q28IN9	PRKR-interacting protein 1 homolog OS=Xenopus tropicalis OX=8364 GN=prkrip1 PE=2 SV=1
Q568A0	PRKR-interacting protein 1 homolog OS=Danio rerio OX=7955 GN=prkrip1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000035 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000300 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000474 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000520 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000954 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004607 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004896 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007099 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007737 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0014540 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0028122 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0028160 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13776 all species →	DUF4172	Domain of unknown function (DUF4172)	Family	Interproscan
PF02661 all species →	Fic	Fic/DOC family	Family	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF00264 all species →	Tyrosinase	Common central domain of tyrosinase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF06658 all species →	DUF1168	Protein of unknown function (DUF1168)	Family	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF03024 all species →	Folate_rec	Folate receptor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025230 all species →	Domain	Domain of unknown function DUF4172	Interproscan
IPR003812 all species →	Domain	Fido domain	Interproscan
IPR036597 all species →	Homologous_superfamily	Fido-like domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR040198 all species →	Family	Fido domain-containing protein	Interproscan
IPR002227 all species →	Domain	Tyrosinase copper-binding domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR008922 all species →	Homologous_superfamily	Di-copper centre-containing domain superfamily	Interproscan
IPR050316 all species →	Family	Tyrosinase and Hemocyanin	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR053134 all species →	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR009548 all species →	Family	PRKR-interacting protein 1	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050350 all species →	Family	Complement & Cell Adhesion Regulators	Interproscan
IPR004269 all species →	Family	Folate receptor	Interproscan
IPR018143 all species →	Domain	Folate receptor-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13504 all species →	FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145	Interproscan
PTHR11474 all species →	TYROSINASE FAMILY MEMBER	Interproscan
PTHR24559 all species →	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan
PTHR13507 all species →	UNCHARACTERIZED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR19325 all species →	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan
PTHR10517 all species →	FOLATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0004860 all species →	Molecular Function	protein kinase inhibitor activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006469 all species →	Biological Process	negative regulation of protein kinase activity	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0031362 all species →	Cellular Component	obsolete anchored component of external side of plasma membrane	Interproscan
GO:0032217 all species →	Molecular Function	riboflavin transmembrane transporter activity	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:1902444 all species →	Molecular Function	riboflavin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26159	PRKRIP1; PRKR-interacting protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.