Gene detail

Detailed information of g840.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_041116827.1, dnaJ homolog subfamily C member 9 [Polyodon spathula]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q91WN1	DnaJ homolog subfamily C member 9 OS=Mus musculus OX=10090 GN=Dnajc9 PE=1 SV=2
Q8WXX5	DnaJ homolog subfamily C member 9 OS=Homo sapiens OX=9606 GN=DNAJC9 PE=1 SV=1
Q9FL54	Chaperone protein dnaJ 6 OS=Arabidopsis thaliana OX=3702 GN=ATJ6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00366	Ribosomal_S17	Ribosomal protein S17	Domain	Interproscan
PF16205	Ribosomal_S17_N	Ribosomal_S17 N-terminal	Family	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF05970	PIF1	PIF1-like helicase	Family	Interproscan
PF02995	DUF229	Protein of unknown function (DUF229)	Family	Interproscan
PF07004	SHIPPO-rpt	Sperm-tail PG-rich repeat	Repeat	Interproscan
PF00226	DnaJ	DnaJ domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000266	Family	Small ribosomal subunit protein uS17	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR032440	Domain	Small ribosomal subunit protein uS17, N-terminal	Interproscan
IPR052510	Family	Oomycete RxLR Effector	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR051055	Family	PIF1 DNA helicase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010285	Family	DNA helicase Pif1-like	Interproscan
IPR004245	Family	Protein of unknown function DUF229	Interproscan
IPR017850	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR010736	Repeat	Sperm-tail PG-rich repeat	Interproscan
IPR001623	Domain	DnaJ domain	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR052594	Family	J domain-containing protein	Interproscan
IPR018253	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR016084	Homologous_superfamily	Haem oxygenase-like, multi-helical	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	Interproscan
PTHR45895	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR24347	SERINE/THREONINE-PROTEIN KINASE	Interproscan
PTHR47642	ATP-DEPENDENT DNA HELICASE	Interproscan
PTHR10974	UNCHARACTERIZED	Interproscan
PTHR44144	DNAJ HOMOLOG SUBFAMILY C MEMBER 9	Interproscan
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0004683	Molecular Function	calcium/calmodulin-dependent protein kinase activity	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031072	Molecular Function	heat shock protein binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02949	RP-S11e, RPS11; small subunit ribosomal protein S11e	-	Chaperones and folding catalysts	ko03110	deepkoala
			Protein kinases	ko01001	deepkoala
			Ribosome	ko03011	deepkoala