Gene detail

Detailed information of g8413.t1 in Acropora digitifera

Genomic Location: chr4Alt:8716323...8730397
NR annotation: XP_029195093.2, protein VAC14 homolog [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8413.t1

ATGGCAGAAAAAGACCTTTCACCTTTAACCCCGAGCATTGCGCGTGGATTGAATGACAAATTGTATGAAAAACGGAAAGTAGCAGCCTTGGAAATCGAGCGCATGGTGAAAGAGTTCATCAACAGCAATGAGGCTGGGCAAATCACAAGTTTAACAGCTGTACTTGCTGAAGAATTTGCAGTTTCACACAACAATCACGCTAGAAAAGGAGGACTCATCGGTCTGGCTGCAACTGCCATTGCACTAGGAAAGGATGCTGGTCTGTATCTCAAAAGTCTCATTCCTCCAGTTTTGACGTGTTTCTACGATCAGGATAGTAGAGTGCGATACTATGCCTGTGAAGCTCTTTATAACATTGCTAAAGTCGCAAGAGGATCTGTGTTACCATTCTTCAACAATGTATTTGATGGCCTTAGTAAACTTGCTGCCGATCCTGATCCCAATGTGAAGAATGGAGCTGAGTTACTTGATAGATTAATAAAAGATATTGTGACAGAAAGTTCCTCGTTTGATTTGGTATCTTTCATTCCCCTGCTGAGGGACAGAATATACACTGCCAATCCTTTTGCAAAACAATTCTTGGTCTCTTGGTTACAAGTGTTGTATGCTGTACCAGATGTGGATCTCATTTCTCACCTTCCTGAGTTTCTTGATGGACTTTTCAACATTTTCAAAGATCGCAATCCTGAGATCAGAAAAATGTGTGAGGCTATTCTTAGTGAATTCCTCAGAGGGATCAAGAAAGAACCTGAAAATGTCAACTTTGCTCACATGGTCAATATTTTAGTGCTTTATTCACAGCCAGAAGCTTCAGATGATGTCATCCAATTCACTGCGATTACTTGAAATATCAAAGAAGCTGCAAAGACCGTCAATCAAAGTTTGATGCGACTGATCACAGAGGACGATGACAAAGATGTTGATGGTGATGCCATATCCATGGATTGTGATAATGCAGTTGTTGAAATGCCAACTCAGCTGGACCTTGGTCCTGTTATCAATGTGTTGACAAATCAGTTGGCAAACAAGTCAATACAAACAAGAATAGCAGTCCTCCGATGGGTGTTACTGCTTCACATGAAAACTCCAAATAAGATATTTGGTAAAATTGAGGATCTTTTTCCAAAACTTCTGGATGCTCTTTCAGATCCCTCTGATGAGGTTGTTCTTCTTGACTTGGAGGCTCTTGCAGAGATCTCTGCCTCACCAGCAGGACCACCAAGGAACAGTCCACCAAGGAGTATGTCAGACACAGGATCACCAACCACAGATCAGACTTCTGCACCACACAGGCAACTCAACAAGTATTTTCACAATTTCATGCACAATGTTACGCTTCTCTTCAGAACGAACAAGAAACTGTTGGAGGAAAGAGGCTCTTTTATTTTGAGGCAACTCTGTCTTTTGTTAAATGCTGAAGACATCTATAGAGCTTTATCAGAGATCATTGTACAAGAAGAGGACTTCCAGTTTGCAGCACAAATGGTGCGATATTTGAACATGATACTGCTGACATCTAGTGAATTGTTTCACCTCAGAAACCAACTCAGAGAACTTGCCACACCTGAGAGCTGTTCATTGTTTACATCTTTGTATCAGTCTTGGTGTCACAATCCTGTTGCCACAGTTTCCTTGTGTTTATTGACACAGAATTACCAGCATGCATGCGACCTTCTCATGGTTTTTGGACAATTGGAAGTGAATGTTGATTTTCTCATTCAGATTGATAAATTAGTTCAACTGATCGAATCTCCTATATTTACATCCTTGCGTCTTCAGCTTTTAGATACTCAACACAATTATTTCCTTCTCAAATCTCTCTACGGATTGCTGATGCTTCTTCCTCAGAGTGATGCATTTACAACCTTAAGAAACAGATTGGATTGTGTGCCAAATGGGAAAGTACTCTCTTCTGATATGAGTGACAGGAGAAGTACTTGTGATTTTCCTTGCCGCGAATATGTACAGCAAATAAATTTCCAAGAACTCTTGCAGCAGTTTAAGGCCGTTCAACAGAAACACTTTATCAATAAGCATCCTCGCTCTCCTCATCTCACAAATCTTACAAAAAATCTGTCAAATGATTAG

Transcript

chr4Alt.g8413.t1

GGGATCGCCTGTGACAAATCTCCTCACAATCTTTCATTTTGGGTGGAAGTCGCACAAATGTGGTCCATTTTGTGGTTAAAATGGCAGAAAAAGACCTTTCACCTTTAACCCCGAGCATTGCGCGTGGATTGAATGACAAATTGTATGAAAAACGGAAAGTAGCAGCCTTGGAAATCGAGCGCATGGTGAAAGAGTTCATCAACAGCAATGAGGCTGGGCAAATCACAAGTTTAACAGCTGTACTTGCTGAAGAATTTGCAGTTTCACACAACAATCACGCTAGAAAAGGAGGACTCATCGGTCTGGCTGCAACTGCCATTGCACTAGGAAAGGATGCTGGTCTGTATCTCAAAAGTCTCATTCCTCCAGTTTTGACGTGTTTCTACGATCAGGATAGTAGAGTGCGATACTATGCCTGTGAAGCTCTTTATAACATTGCTAAAGTCGCAAGAGGATCTGTGTTACCATTCTTCAACAATGTATTTGATGGCCTTAGTAAACTTGCTGCCGATCCTGATCCCAATGTGAAGAATGGAGCTGAGTTACTTGATAGATTAATAAAAGATATTGTGACAGAAAGTTCCTCGTTTGATTTGGTATCTTTCATTCCCCTGCTGAGGGACAGAATATACACTGCCAATCCTTTTGCAAAACAATTCTTGGTCTCTTGGTTACAAGTGTTGTATGCTGTACCAGATGTGGATCTCATTTCTCACCTTCCTGAGTTTCTTGATGGACTTTTCAACATTTTCAAAGATCGCAATCCTGAGATCAGAAAAATGTGTGAGGCTATTCTTAGTGAATTCCTCAGAGGGATCAAGAAAGAACCTGAAAATGTCAACTTTGCTCACATGGTCAATATTTTAGTGCTTTATTCACAGCCAGAAGCTTCAGATGATGTCATCCAATTCACTGCGATTACTTGAAATATCAAAGAAGCTGCAAAGACCGTCAATCAAAGTTTGATGCGACTGATCACAGAGGACGATGACAAAGATGTTGATGGTGATGCCATATCCATGGATTGTGATAATGCAGTTGTTGAAATGCCAACTCAGCTGGACCTTGGTCCTGTTATCAATGTGTTGACAAATCAGTTGGCAAACAAGTCAATACAAACAAGAATAGCAGTCCTCCGATGGGTGTTACTGCTTCACATGAAAACTCCAAATAAGATATTTGGTAAAATTGAGGATCTTTTTCCAAAACTTCTGGATGCTCTTTCAGATCCCTCTGATGAGGTTGTTCTTCTTGACTTGGAGGCTCTTGCAGAGATCTCTGCCTCACCAGCAGGACCACCAAGGAACAGTCCACCAAGGAGTATGTCAGACACAGGATCACCAACCACAGATCAGACTTCTGCACCACACAGGCAACTCAACAAGTATTTTCACAATTTCATGCACAATGTTACGCTTCTCTTCAGAACGAACAAGAAACTGTTGGAGGAAAGAGGCTCTTTTATTTTGAGGCAACTCTGTCTTTTGTTAAATGCTGAAGACATCTATAGAGCTTTATCAGAGATCATTGTACAAGAAGAGGACTTCCAGTTTGCAGCACAAATGGTGCGATATTTGAACATGATACTGCTGACATCTAGTGAATTGTTTCACCTCAGAAACCAACTCAGAGAACTTGCCACACCTGAGAGCTGTTCATTGTTTACATCTTTGTATCAGTCTTGGTGTCACAATCCTGTTGCCACAGTTTCCTTGTGTTTATTGACACAGAATTACCAGCATGCATGCGACCTTCTCATGGTTTTTGGACAATTGGAAGTGAATGTTGATTTTCTCATTCAGATTGATAAATTAGTTCAACTGATCGAATCTCCTATATTTACATCCTTGCGTCTTCAGCTTTTAGATACTCAACACAATTATTTCCTTCTCAAATCTCTCTACGGATTGCTGATGCTTCTTCCTCAGAGTGATGCATTTACAACCTTAAGAAACAGATTGGATTGTGTGCCAAATGGGAAAGTACTCTCTTCTGATATGAGTGACAGGAGAAGTACTTGTGATTTTCCTTGCCGCGAATATGTACAGCAAATAAATTTCCAAGAACTCTTGCAGCAGTTTAAGGCCGTTCAACAGAAACACTTTATCAATAAGCATCCTCGCTCTCCTCATCTCACAAATCTTACAAAAAATCTGTCAAATGATTAGGCTTAGGTAAAGCAATAATATAAATAAAAAATATGACTTTATTGTTTCTTGGTGAATTTTAAAAATCAATATTTTTAAATGCTTACTTGGTCCAGTATACTGATGCCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68F38	Protein VAC14 homolog OS=Xenopus laevis OX=8355 GN=vac14 PE=2 SV=1
Q5ZIW5	Protein VAC14 homolog OS=Gallus gallus OX=9031 GN=VAC14 PE=2 SV=1
Q66L58	Protein VAC14 homolog OS=Danio rerio OX=7955 GN=vac14 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12755 all species →	Vac14_Fab1_bd	Vacuolar 14 Fab1-binding region	Repeat	Interproscan
PF11916 all species →	Vac14_Fig4_bd	Vacuolar protein 14 C-terminal Fig4p binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR026825 all species →	Family	Vacuole morphology and inheritance protein 14	Interproscan
IPR021841 all species →	Domain	Vacuolar protein 14, C-terminal Fig4-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16023 all species →	TAX1 BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000306 all species →	Cellular Component	obsolete extrinsic component of vacuolar membrane	Interproscan
GO:0006661 all species →	Biological Process	phosphatidylinositol biosynthetic process	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:0070772 all species →	Cellular Component	PAS complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15305	VAC14, TAX1BP2; vacuole morphology and inheritance protein 14	-	Human T-cell leukemia virus 1 infection	ko05166	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.