Gene detail

Detailed information of g8423.t1 in Acropora digitifera

Genomic Location: chr4Alt:8837263...8838237
NR annotation: XP_044175678.1, lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QGW7	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Gallus gallus OX=9031 GN=LITAF PE=2 SV=1
P0C0T0	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Rattus norvegicus OX=10116 GN=Litaf PE=2 SV=1
Q9JLJ0	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Mus musculus OX=10090 GN=Litaf PE=1 SV=1

Gene family

Family type	Membership / link
Transcription factor family	zf-LITAF-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10601 all species →	zf-LITAF-like	LITAF-like zinc ribbon domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006629 all species →	Domain	LPS-induced tumour necrosis factor alpha factor	Interproscan
IPR037519 all species →	Family	LITAF domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23292 all species →	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19363	LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor	-	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.