Gene detail

Detailed information of g845.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3179071.1, unnamed protein product [Porites lobata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VU57	Cytosolic carboxypeptidase 6 OS=Homo sapiens OX=9606 GN=AGBL4 PE=1 SV=3
Q09LZ8	Cytosolic carboxypeptidase 6 OS=Mus musculus OX=10090 GN=Agbl4 PE=1 SV=1
Q09296	Cytosolic carboxypeptidase 6 OS=Caenorhabditis elegans OX=6239 GN=ccpp-6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000022 (this species only)
Orthogroup (gene family)	OG0000043 (this species only)
Orthogroup (gene family)	OG0000043 (this species only)
Orthogroup (gene family)	OG0000379 (this species only)
Orthogroup (gene family)	OG0000798 (this species only)
Orthogroup (gene family)	OG0001869 (this species only)
Orthogroup (gene family)	OG0004785 (this species only)
Orthogroup (gene family)	OG0006499 (this species only)
Orthogroup (gene family)	OG0007285 (this species only)
Orthogroup (gene family)	OG0007920 (this species only)
Orthogroup (gene family)	OG0008660 (this species only)
Orthogroup (gene family)	OG0032557 (this species only)
Orthogroup (gene family)	OG0048320 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF18027 all species →	Pepdidase_M14_N	Cytosolic carboxypeptidase N-terminal domain	Domain	Interproscan
PF00246 all species →	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF17904 all species →	KH_9	FMRP KH0 domain	Domain	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR050821 all species →	Family	Cytosolic carboxypeptidase	Interproscan
IPR040626 all species →	Domain	Cytosolic carboxypeptidase, N-terminal	Interproscan
IPR000834 all species →	Domain	Peptidase M14, carboxypeptidase A	Interproscan
IPR008350 all species →	Family	Mitogen-activated protein (MAP) kinase, ERK3/4	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050117 all species →	Family	Mitogen-activated protein kinase	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR040472 all species →	Domain	Synaptic functional regulator FMRP, KH0 domain	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR040148 all species →	Family	Fragile X messenger ribonucleoprotein 1	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR011078 all species →	Family	Pyridoxal phosphate homeostasis protein	Interproscan
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12756 all species →	CYTOSOLIC CARBOXYPEPTIDASE	Interproscan
PTHR24055 all species →	MITOGEN-ACTIVATED PROTEIN KINASE	Interproscan
PTHR18937 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan
PTHR10603 all species →	FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN	Interproscan
PTHR10146 all species →	PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035610 all species →	Biological Process	protein side chain deglutamylation	Interproscan
GO:0004181 all species →	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004707 all species →	Molecular Function	MAP kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005844 all species →	Cellular Component	obsolete polysome	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0036464 all species →	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0042803 all species →	Molecular Function	protein homodimerization activity	Interproscan
GO:0043488 all species →	Biological Process	regulation of mRNA stability	Interproscan
GO:0045182 all species →	Molecular Function	translation regulator activity	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06855	MAPK4_6; mitogen-activated protein kinase 4/6	EC:2.7.11.24	Protein kinases	ko01001	deepkoala
K23439	AGBL4, CCP6; cytosolic carboxypeptidase protein 6	EC:3.4.17.24	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.