Detailed information of g8472.t1 in Acropora digitifera

Genomic Location: chr4Alt:9276029...9280503
NR annotation: XP_044175697.1, E3 ubiquitin-protein ligase RNF114-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6J2U6E3 ubiquitin-protein ligase RNF114 OS=Rattus norvegicus OX=10116 GN=Rnf114 PE=2 SV=1
Q9ET26E3 ubiquitin-protein ligase RNF114 OS=Mus musculus OX=10090 GN=Rnf114 PE=1 SV=2
Q6J1I8E3 ubiquitin-protein ligase RNF114 OS=Sus scrofa OX=9823 GN=RNF114 PE=1 SV=1
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|U-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13445
all species →		zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF05605
all species →		zf-Di19Drought induced 19 protein (Di19), zinc-bindingDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR027370
all species →		DomainZinc finger, RING-type, eukaryoticInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR051438
all species →		FamilyRNF E3 ubiquitin-protein ligaseInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR008598
all species →		DomainDrought induced 19 protein type, zinc-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46016
all species →		ZINC FINGER, RING/FYVE/PHD-TYPEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g8472.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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