Gene detail

Detailed information of g8488.t2 in Acropora digitifera

Genomic Location: chr4Alt:9424445...9436207
NR annotation: XP_015766690.1, PREDICTED: alanine aminotransferase 2-like isoform X1 [Acropora digitifera]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr4Alt.g8488.t2

GAATCCAAGATGGCGACCTCATTAGAGTTTTTTTTTCGACCATCCAACCGCCTGCGTACAGGCCAAGCGTAGCAAAGCTGCGAAGATTATTAACATTAAAAATAATCATTGACATTGAGTTCTTAAATGCATATTTTGAATATAATAATTAGTGCCAAAAAAGTCACGCAATTTCACCTGGAGATGTTTATCCGATGACGTGGCTTGGTTTTTACGTATTGTAAGTTTTTTTAAAACTATTTTCGATGGCTACAGAGGAAATCATCACCCACAAGACAGTTAGCCTAAGCCATCAGAGAGCTAGAAATGCCCGAGGATGGATCGATGCGCGTGCAAGCCAGATCAATCTGGAGTTAGCCAGGGGTGAAAAAAAACCATTTGATGAAGTGATGAAATTGTATGGAGACCCTCATGCATTTGGACAGCAACCTATTACATCATTGAGACAATTACTGTCATGCCTTCTTTGTCCAAATTTTCTTGATGATCCAATCTACCCACAAGATATCAGAGAAAAGGCTCGAAGGATCCTTGAGGCAAAACCAGGATTCGCTGTTGCTTCATACGCCGCTGTCGAGGGATTAGGAATTATTCGGAAAAATGTGGCTCAGTTCATTTCGAAGAGAGACGGGTACACAGCTGACCCAGAAGACATCTATTTAACAAGCGGAGGAGCGAATGGAATAAAGATTGGACTCGAACTGTTTGCAGCACATTCTTTGGAAAGTAAATGTAAATCTGGAATTATGATTCCGATGCCTGGTTTTTATCATTACAAAGCTAGATGCATAGAGTTCGATCTCTACCAGATACCTTATTACCTGGATGAAGAGAGAGACTGGGCCTTGAGTATCCCAGAGTTGAGGAGAGCACTTGATGAAGCTAGACCACATTGTAGACCCCAGGCACTTGTTCTTATTAATCCAGGAAATCCCGCAGGTCAGGTATTGACGTACGATAACATCCGGGATATTATCAAGTTTTGCGCGCATGAAAAACTGGTTTTATTTGCTGATGAAGTCTATCAAGAAACAATGTATAGGGAGGACGTCACGTTCCACTCATGCAGAAAGGTTGTCAAAGACCTGGGACCCGAATACCACAAGTTCCAACTGATGTCAATCAACTCGGTCTCTAAGGGATTTTATGGCGAATGTTGTTTGAGGGGTGCGTACTTAGAGCTGGTTGGATTCAGCGACAAGGTGAAACAACAGATATTAGACCTCAACTCACCCAACATTTGCCCTTCAATGATTGGACAAGCAGCAGTGAGTGCCATGTGTAATCCGCCGCAGCCTGGGGACGAATCCTATGAGACCTTTTTGAAGGAAAAGCGAACTGTTTTAGATTCTTATGGAAGGAAGGCGAAAATTGTCGTGTCGATGCTGAGGACCCTTGAAGGAGTAGTTTGTAACGAAATTAATGGCTCATTGTATGCGTTTCCAAGCATCAAACTTCCTCGAAAAGCTGTTGAAGCAGCAAATCTGAACAATTGTACACCAGATGAATTCTACTGTTGGCAAATGCTTGAAGAAACTGGGATAGGTCCTATCCCTGGAACGTATTTTGGGCAAAAGGAAGGAACGCATCATTTCAGATTCACTATTTTACCCCCTGAGGAAAAAGTAGTCCTCATGTTTGACCGAATCACCAAGTTTCACCAGCAGTTTATGCAGAAATACCGCGACGAAGACGTGGGAAATGAAAGAGCGTACGAGCAGACATCGAAGTCTTAGAATTCCGTAATCTATTCATTTGATGTCTTGCAACATTTTCTTCGGAATTTAAAGATTAACCAGGATAATTGATCAGGAAATGTGGGGCTGAAATCAAATTTAATCAGGCCGTGGCACGCAGAAGACATCTCGTGCTTACGACATTTAAACTGACTTTTAAAAGAAAAAAAGCCTTGCGTATTTTGCATGCGAATCGTGCCAGCGCCACAGCTTTAATATTTGTTGCATGTAAAAATCGGCCGATTATAGGGGATTGGCCTCTGTCCATATTCCATAATCGTGATTTCATCTCACGTTGTCCTCGAACTGCTAGCGTTGTCTTTCTGGAGAAAGAGAGATGACAGCCGAAGTAAAAAAAATTTGATGGAAGAAAGAAATACAAATTTGTCTTCATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BGT5	Alanine aminotransferase 2 OS=Mus musculus OX=10090 GN=Gpt2 PE=1 SV=1
Q8TD30	Alanine aminotransferase 2 OS=Homo sapiens OX=9606 GN=GPT2 PE=1 SV=1
Q6GM82	Alanine aminotransferase 2 OS=Xenopus laevis OX=8355 GN=gpt2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR045088 all species →	Family	Aminotransferase ALAT1/2-like	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11751 all species →	ALANINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004021 all species →	Molecular Function	L-alanine:2-oxoglutarate aminotransferase activity	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00814	GPT, ALT; alanine transaminase	EC:2.6.1.2	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.