Gene detail

Detailed information of g85.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCP5405136.1, DeoR family transcriptional regulator [Pseudomonadaceae bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P19172	Acidic endochitinase OS=Arabidopsis thaliana OX=3702 GN=CHIB1 PE=2 SV=2
Q9C105	Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAPB1E7.04c PE=3 SV=1
Q9JIQ8	Transmembrane protease serine 2 OS=Mus musculus OX=10090 GN=Tmprss2 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000029 (this species only)
Orthogroup (gene family)	OG0000120 (this species only)
Orthogroup (gene family)	OG0000959 (this species only)
Orthogroup (gene family)	OG0001026 (this species only)
Orthogroup (gene family)	OG0001029 (this species only)
Orthogroup (gene family)	OG0002454 (this species only)
Orthogroup (gene family)	OG0004472 (this species only)
Orthogroup (gene family)	OG0005504 (this species only)
Orthogroup (gene family)	OG0007662 (this species only)
Orthogroup (gene family)	OG0007863 (this species only)
Orthogroup (gene family)	OG0012109 (this species only)
Orthogroup (gene family)	OG0025845 (this species only)
Orthogroup (gene family)	OG0047492 (this species only)
Orthogroup (gene family)	OG0170732 (this species only)
Orthogroup (gene family)	OG0173873 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF03024 all species →	Folate_rec	Folate receptor family	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF02504 all species →	FA_synthesis	Fatty acid synthesis protein	Family	Interproscan
PF00887 all species →	ACBP	Acyl CoA binding protein	Domain	Interproscan
PF13897 all species →	GOLD_2	Golgi-dynamics membrane-trafficking	Domain	Interproscan
PF06209 all species →	COBRA1	Cofactor of BRCA1 (COBRA1)	Family	Interproscan
PF12525 all species →	DUF3726	Protein of unknown function (DUF3726)	Family	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF11979 all species →	SARA_C	Smad anchor for receptor activation-like, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR050127 all species →	Family	Serine Proteases (Peptidase S1 Family)	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR004269 all species →	Family	Folate receptor	Interproscan
IPR018143 all species →	Domain	Folate receptor-like	Interproscan
IPR037363 all species →	Family	Sec13/Seh1 family	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR003664 all species →	Family	Fatty acid synthesis PlsX protein	Interproscan
IPR012281 all species →	Family	Phospholipid biosynthesis protein, PlsX-like	Interproscan
IPR000582 all species →	Domain	Acyl-CoA-binding protein, ACBP	Interproscan
IPR009038 all species →	Domain	GOLD domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR052269 all species →	Family	Golgi apparatus maintenance and PI4KB interaction protein	Interproscan
IPR035984 all species →	Homologous_superfamily	Acyl-CoA binding protein superfamily	Interproscan
IPR036598 all species →	Homologous_superfamily	GOLD domain superfamily	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR050542 all species →	Family	Glycosyl Hydrolase 18 Family Chitinases	Interproscan
IPR001579 all species →	Active_site	Glycosyl hydrolases family 18 (GH18) active site	Interproscan
IPR001223 all species →	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR010405 all species →	Family	Cofactor of BRCA1	Interproscan
IPR022201 all species →	Family	Protein of unknown function DUF3726	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR043544 all species →	Family	Sorting nexin-10/11	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR022557 all species →	Domain	Smad anchor for receptor activation-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24264 all species →	TRYPSIN-RELATED	Interproscan
PTHR10517 all species →	FOLATE RECEPTOR	Interproscan
PTHR11024 all species →	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	Interproscan
PTHR30100 all species →	FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX	Interproscan
PTHR22973 all species →	LD35087P	Interproscan
PTHR45708 all species →	ENDOCHITINASE	Interproscan
PTHR13503 all species →	NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B	Interproscan
PTHR31751 all species →	SI:CH211-108C17.2-RELATED-RELATED	Interproscan
PTHR46209 all species →	PX DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46319 all species →	ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0031362 all species →	Cellular Component	obsolete anchored component of external side of plasma membrane	Interproscan
GO:0032217 all species →	Molecular Function	riboflavin transmembrane transporter activity	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:1902444 all species →	Molecular Function	riboflavin binding	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0031080 all species →	Cellular Component	nuclear pore outer ring	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0035859 all species →	Cellular Component	Seh1-associated complex	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0000062 all species →	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0004568 all species →	Molecular Function	chitinase activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032021 all species →	Cellular Component	NELF complex	Interproscan
GO:0034244 all species →	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016050 all species →	Biological Process	vesicle organization	Interproscan
GO:1901981 all species →	Molecular Function	phosphatidylinositol phosphate binding	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13649	FOLR; folate receptor	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala
K17924	SNX10_11; sorting nexin-10/11	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala
K23935	ACBD3; golgi resident protein GCP60	-	Salmonella infection	ko05132	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.