Gene detail

Detailed information of g8506.t1 in Montipora capitata

Genomic Location: Sc0000208:420917...441782
NR annotation: XP_015778667.1, PREDICTED: uncharacterized protein LOC107356579 [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8506.t1

atggattctctgcggatccccgcaggtttggagaagtttctagctcacgccgaaagccttcatccttcgaacaaccctaaaggagagaacggcttcgccaaagaatttatgcaattaaaggctttgtcgtctcaactcaggaaggaaccaggatacagttgtcatcatggcgagttggagtgcaacaggccgaaaaaccgttataaagatattgtgccatttgactacaatcggatcactttgccaagaataccaggtgtagtagggtcagattacatcaatggaaattatataaagggaccagatgggagtatatcataccttgccttacaaggtcctttaccacgaacaatagatgacttttggagattgatagcttcccacagatgtcaggttgtgattatggtgtgtaaggaagttgaaatggggaagctcaaatgcaaaagatattggccagagagccaggatgaaaagctcaaatttgctggaatggatatatcactgttgtcagaagaagacttggatgaaggctttgtgatgagaagaatgaaggtgaaatcttcccaagatgaaatgctggtaacacagttgcagtacactgcatggcctgatcacgatgttccaaaatctgcagcacctctcttagaaatgaacaagactctttctagtttgcaaggcaacaaaaaacaaccaattttaatccactgcagcgctggttgtggtagaacaggaacaatttgtgctgtggattacgcctgggctcttcttaagatgcaaaaaacagacaatttcagtgtgtttgatgttgtatcaaaccttcgaaggcaaagaatggcaatggttcagacaaaggaacagtatgccttagtttacaaggctgtggttcatcttgtggaggaggagttaaacaaagacgagataaaatcccatacttacgtaaatgttcctgtctcaacgcctctaagatctcctcagggaaactcaagttatgacaatcctgagtttttcaagggtgtggttcggtggaaggagagtgataaacaaaatggatcagttccaaaggcaccagcaacagcaacagaatcaaagacagataaaagcgaatctaagcaacgaacgacaaatgaagggagtggaggcaacaattcaggtgttgaaagaacaaacgatataaatgattatgtaaatcttcaatttccaaccagaactggagcaaataataaatttgcaactgttggacaaggaacaaaacccacggtatcagcaaaaccgtcctttgcaaaaggagatttagataaaagagttttaagtgctaatgcaacgaaaggcggagtcagaaaggagccgaactctcccaccgtttctgactatgagatacttgcggttccagcgaggcaaaagtcagggagtgacacagctatacaaaggaaaaaagattcagtaggagactatgaagttccgccactgtctggttcgagtgttaaaaaggaggaggccagacatatggctgaagttatagccaacgctaccaattcacctgggactagctccaacagggcagcaagtgttccaaatgtcctcgatgatatgctcctatcgaaaaacattagttcgcaacctcaaaatgcggacagtgtagtgaatgacagcaaagcttttcgcacggtccccaccagaataaagtcatcatctgggcctaaacgctttcctttgactgcaggctcgtttgaagatcctcgcgagagtggcgagaatggctttaaggttgttcagtcgccgactaaagacaccggagattatagccttgttggagccaccagccccacatttccgaatgaagtggaaaatcctgcgtttttcgcacagtggaatcaaaacttaggatcacagaaaacgaatccattggggaaaagccccccaaaacaagtcgaaaaaagcagggcatgttctccagttggagaatactatttattggggattcccggagagggaaaccaaatgccggtgttagaggaatcgacacctaacattgatctttgcaagcaaaatgtcagtggtgtctcaaaagacaccaaacaaagatctgaggtggaatcttcgtatgcactagttggacaaccccagcaacagccacggaagatgtcgcctacacacgcaatgacaggaagtactcagagcagtagcgttttaactggaactcctggttatcctatagcggccaacaggaaccccattatagacacctcatacgaagttattggacagaagttgcaacagcctggaaagaagtcaccggtgtcgtcacgtgcacatgcgggtggaagttgtcaagacagcttaaacgacttctcctatgcggaagttagcaagcctaccatatgcccaccaaactctgacaaagataagcccgtgcgggataaaatagagagcgttccagagtctcgcggaagtcagactgaaggaaaagaattgcatgttgtcaaagatgtttatgctgttgtggtaaagccttccaacagtccgaacataccagcaaaatttgttggctctgttccaaatctaaggagtcaaacgtcgtctagcagcctgaagagccatacatcgacgtcaagtgaggactcagaagatgcccctccggtccctaaaaagacaaacgatgcttatcttgctccaggccaagagcactacgaaagcgttgaacaggctacaaagggaactttgggccgcttcaagatgatgatgaaaagctctccaaaagtaagtcagtga

Transcript

g8506.t1

ATGGATTCTCTGCGGATCCCCGCAGGTTTGGAGAAGTTTCTAGCTCACGCCGAAAGCCTTCATCCTTCGAACAACCCTAAAGGAGAGAACGGCTTCGCCAAAGAATTTATGCAATTAAAGGCTTTGTCGTCTCAACTCAGGAAGGAACCAGGATACAGTTGTCATCATGGCGAGTTGGAGTGCAACAGGCCGAAAAACCGTTATAAAGATATTGTGCCATTTGACTACAATCGGATCACTTTGCCAAGAATACCAGGTGTAGTAGGGTCAGATTACATCAATGGAAATTATATAAAGGGACCAGATGGGAGTATATCATACCTTGCCTTACAAGGTCCTTTACCACGAACAATAGATGACTTTTGGAGATTGATAGCTTCCCACAGATGTCAGGTTGTGATTATGGTGTGTAAGGAAGTTGAAATGGGGAAGCTCAAATGCAAAAGATATTGGCCAGAGAGCCAGGATGAAAAGCTCAAATTTGCTGGAATGGATATATCACTGTTGTCAGAAGAAGACTTGGATGAAGGCTTTGTGATGAGAAGAATGAAGGTGAAATCTTCCCAAGATGAAATGCTGGTAACACAGTTGCAGTACACTGCATGGCCTGATCACGATGTTCCAAAATCTGCAGCACCTCTCTTAGAAATGAACAAGACTCTTTCTAGTTTGCAAGGCAACAAAAAACAACCAATTTTAATCCACTGCAGCGCTGGTTGTGGTAGAACAGGAACAATTTGTGCTGTGGATTACGCCTGGGCTCTTCTTAAGATGCAAAAAACAGACAATTTCAGTGTGTTTGATGTTGTATCAAACCTTCGAAGGCAAAGAATGGCAATGGTTCAGACAAAGGAACAGTATGCCTTAGTTTACAAGGCTGTGGTTCATCTTGTGGAGGAGGAGTTAAACAAAGACGAGATAAAATCCCATACTTACGTAAATGTTCCTGTCTCAACGCCTCTAAGATCTCCTCAGGGAAACTCAAGTTATGACAATCCTGAGTTTTTCAAGGGTGTGGTTCGGTGGAAGGAGAGTGATAAACAAAATGGATCAGTTCCAAAGGCACCAGCAACAGCAACAGAATCAAAGACAGATAAAAGCGAATCTAAGCAACGAACGACAAATGAAGGGAGTGGAGGCAACAATTCAGGTGTTGAAAGAACAAACGATATAAATGATTATGTAAATCTTCAATTTCCAACCAGAACTGGAGCAAATAATAAATTTGCAACTGTTGGACAAGGAACAAAACCCACGGTATCAGCAAAACCGTCCTTTGCAAAAGGAGATTTAGATAAAAGAGTTTTAAGTGCTAATGCAACGAAAGGCGGAGTCAGAAAGGAGCCGAACTCTCCCACCGTTTCTGACTATGAGATACTTGCGGTTCCAGCGAGGCAAAAGTCAGGGAGTGACACAGCTATACAAAGGAAAAAAGATTCAGTAGGAGACTATGAAGTTCCGCCACTGTCTGGTTCGAGTGTTAAAAAGGAGGAGGCCAGACATATGGCTGAAGTTATAGCCAACGCTACCAATTCACCTGGGACTAGCTCCAACAGGGCAGCAAGTGTTCCAAATGTCCTCGATGATATGCTCCTATCGAAAAACATTAGTTCGCAACCTCAAAATGCGGACAGTGTAGTGAATGACAGCAAAGCTTTTCGCACGGTCCCCACCAGAATAAAGTCATCATCTGGGCCTAAACGCTTTCCTTTGACTGCAGGCTCGTTTGAAGATCCTCGCGAGAGTGGCGAGAATGGCTTTAAGGTTGTTCAGTCGCCGACTAAAGACACCGGAGATTATAGCCTTGTTGGAGCCACCAGCCCCACATTTCCGAATGAAGTGGAAAATCCTGCGTTTTTCGCACAGTGGAATCAAAACTTAGGATCACAGAAAACGAATCCATTGGGGAAAAGCCCCCCAAAACAAGTCGAAAAAAGCAGGGCATGTTCTCCAGTTGGAGAATACTATTTATTGGGGATTCCCGGAGAGGGAAACCAAATGCCGGTGTTAGAGGAATCGACACCTAACATTGATCtttgcaagcaaaatgtcagtggTGTCTCAAAAGACACCAAACAAAGATCTGAGGTGGAATCTTCGTATGCACTAGTTGGACAACCCCAGCAACAGCCACGGAAGATGTCGCCTACACACGCAATGACAGGAAGTACTCAGAGCAGTAGCGTTTTAACTGGAACTCCTGGTTATCCTATAGCGGCCAACAGGAACCCCATTATAGACACCTCATACGAAGTTATTGGACAGAAGTTGCAACAGCCTGGAAAGAAGTCACCGGTGTCGTCACGTGCACATGCGGGTGGAAGTTGTCAAGACAGCTTAAACGACTTCTCCTATGCGGAAGTTAGCAAGCCTACCATATGCCCACCAAACTCTGACAAAGATAAGCCCGTGCGGGATAAAATAGAGAGCGTTCCAGAGTCTCGCGGAAGTCAGACTGAAGGAAAAGAATTGCATGTTGTCAAAGATGTTTATGCTGTTGTGGTAAAGCCTTCCAACAGTCCGAACATACCAGCAAAATTTGTTGGCTCTGTTCCAAATCTAAGGAGTCAAACGTCGTCTAGCAGCCTGAAGagcCATACATCGACGTCAAGTGAGGACTCAGAAGATGCCCCTCCGGTCCCTAAAAAGACAAACGATGCTTATCTTGCTCCAGGCCAAGAGCACTACGAAAGCGTTGAACAGGCTACAAAGGGAACTTTGGGCCGCTtcaagatgatgatgaaaagCTCTCCAAAAGTAAGTCAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05209	Tyrosine-protein phosphatase non-receptor type 12 OS=Homo sapiens OX=9606 GN=PTPN12 PE=1 SV=3
P35831	Tyrosine-protein phosphatase non-receptor type 12 OS=Mus musculus OX=10090 GN=Ptpn12 PE=1 SV=3
Q9Y2R2	Tyrosine-protein phosphatase non-receptor type 22 OS=Homo sapiens OX=9606 GN=PTPN22 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004398 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR047170 all species →	Family	Tyrosine-protein phosphatase non-receptor type 12/18/22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45983 all species →	TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0004726 all species →	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035335 all species →	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18024	PTPN12_18_22; tyrosine-protein phosphatase non-receptor type 12/18/22	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8506.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

62.1Max TPM

29.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	28.18	62.07
whole organisms · low pH treatment	15	15	31.61	56.90
whole organisms · extra low pH treatment pH treatment	12	12	29.89	53.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	62.07
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	46.69
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	45.29
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	41.17
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	41.16
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	37.62
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	30.74
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	30.21
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	29.07
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	28.36
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	26.24
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	22.35
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	21.54
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	21.09
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	20.66
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	20.28
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	18.79
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	17.57
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	12.31
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	11.00
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	7.58
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	56.90
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	50.00
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	48.95
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	44.33
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	40.37
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	37.48
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	36.29
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	34.27
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	30.15
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	21.67
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	16.19
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	15.85
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	14.52
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	13.96
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	13.25
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	53.62
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	52.28
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	39.83
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	36.73
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	30.68
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	27.52
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	23.47
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	23.00
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	21.81
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	17.85
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	16.20
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	15.67

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.