Detailed information of g852.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAJ7385647.1, PR domain zinc finger protein 13 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9H4Q3PR domain zinc finger protein 13 OS=Homo sapiens OX=9606 GN=PRDM13 PE=1 SV=2
E9PZZ1PR domain zinc finger protein 13 OS=Mus musculus OX=10090 GN=Prdm13 PE=2 SV=1
O15381Nuclear valosin-containing protein-like OS=Homo sapiens OX=9606 GN=NVL PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Ubiquitin FamilyE3|E3 adaptor Cullin RING|Cullin

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13650Asp_protease_2Aspartyl proteaseDomainInterproscan
PF19031Intu_longin_1First Longin domain of INTU, CCZ1 and HPS4DomainInterproscan
PF19033Intu_longin_3Intu longin-like domain 3DomainInterproscan
PF19032Intu_longin_2Intu longin-like domain 2DomainInterproscan
PF17862AAA_lid_3AAA+ lid domainDomainInterproscan
PF16725Nucleolin_bdNucleolin binding domainDomainInterproscan
PF00004AAAATPase family associated with various cellular activities (AAA)DomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF00888CullinCullin familyRepeatInterproscan
PF10557Cullin_Nedd8Cullin protein neddylation domainDomainInterproscan
PF00169PHPH domainDomainInterproscan
PF00621RhoGEFRhoGEF domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01106NifUNifU-like domainFamilyInterproscan
PF01832GlucosaminidaseMannosyl-glycoprotein endo-beta-N-acetylglucosaminidaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002083DomainMATH/TRAF domainInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR013176FamilyVacuolar fusion protein Ccz1Interproscan
IPR043987DomainCCZ1/INTU/HSP4, first Longin domainInterproscan
IPR043989DomainCCZ1/INTU/HPS4, third Longin domainInterproscan
IPR043988DomainCCZ1/INTU, second Longin domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR041569DomainAAA ATPase, AAA+ lid domainInterproscan
IPR031996DomainNVL2, nucleolin binding domainInterproscan
IPR050168FamilyAAA ATPase domain-containing proteinInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR038100Homologous_superfamilyNVL2, N-terminal domain superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR050331FamilyZinc fingerInterproscan
IPR001373DomainCullin, N-terminalInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR016158DomainCullin homology domainInterproscan
IPR016157Conserved_siteCullin, conserved siteInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR016159Homologous_superfamilyCullin repeat-like-containing domain superfamilyInterproscan
IPR045093FamilyCullinInterproscan
IPR019559DomainCullin protein, neddylation domainInterproscan
IPR036317Homologous_superfamilyCullin homology domain superfamilyInterproscan
IPR000219DomainDbl homology (DH) domainInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR051092FamilyFYVE, RhoGEF and PH domain-containingInterproscan
IPR035899Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR053195FamilyBax-likeInterproscan
IPR001075DomainNIF system FeS cluster assembly, NifU, C-terminalInterproscan
IPR002901DomainMannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domainInterproscan
IPR034904Homologous_superfamilyFe-S cluster assembly domain superfamilyInterproscan
IPR029034Homologous_superfamilyCystine-knot cytokineInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR13056UNCHARACTERIZEDInterproscan
PTHR23077AAA-FAMILY ATPASEInterproscan
PTHR16515PR DOMAIN ZINC FINGER PROTEINInterproscan
PTHR11932CULLINInterproscan
PTHR12673FACIOGENITAL DYSPLASIA PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR46113SNAC DOMAIN-CONTAINING PROTEINInterproscan
PTHR40572PROTEIN BAXInterproscan
PTHR33995PROTEIN CBG18546Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0035658Cellular ComponentMon1-Ccz1 complexInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan
GO:0051973Biological Processobsolete positive regulation of telomerase activityInterproscan
GO:1990275Molecular Functionpreribosome bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0031625Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0031461Cellular Componentcullin-RING ubiquitin ligase complexInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0019005Cellular ComponentSCF ubiquitin ligase complexInterproscan
GO:0030674Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0031462Cellular ComponentCul2-RING ubiquitin ligase complexInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005089Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0016226Biological Processiron-sulfur cluster assemblyInterproscan
GO:0051536Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0004040Molecular Functionamidase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K27045CCZ1; vacuolar fusion protein CCZ1, animal type-Membrane traffickingko04131deepkoala
Membrane traffickingko04131deepkoala

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