Gene detail

Detailed information of g8544.t1 in Tripedalia maipoensis

Genomic Location: scaffold_5:10392669...10432511
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8544.t1

ATGAGGACTACCCGAGAGGAAGCTCTGAGGACCTTAGGTCTAAACGATGGTGCCTCTCCTGATGATATTCGGAATAATTATAAAAAGCTAGCATTGCAGTGTCATCCAGACAAGAATCATGGCAACGAAGAGGCCACTCAAAAATTTCAAGATGTTTCGGCTGCTTATAAAAAACTGACTTCTGATAATGATCCAGACCTGCTTGATGATGAAGAAATGATGACCTGGGCTGACATGATGGAATTATTTAGACGGATGTTTGCCCACAAGAGTTCCATGCACTATCATCATTTCTTCTGTGGTGATGATGATGATGATAGTTATGATTGTGACTACACGGATGATGAATGTGATGATGATGACCACTATTTCTCAGGAGACAGTGATGATGACTATCTTATGGCAGCTGCAAGAAATAGGTTTAGGTCAAGTCACCTTAGACGCCCAATGACAGAATCGGAAGCTCTTCGAAACGCCGAGGAGCTTATAGAGCAAGAAGAAGCGGAGAAACAAAAAGAGGAACGAAAAAGAGCAAAGAGAAAGAAAAAGAAGGAAAAGCGGAAACAGAGGGAGAAAGAAAAAAAGTTACAAGAAGAAGCGGAAAAATCAAGACAAGAAGGGGCACAAGCAGGTGGGAAAATGGATGAAAAACCCCAGGCGGCGATGCCATGTTCTTCACCAAACCATAACGAGGAAGCTTTAAATACACATCATCAAAGTAATAAAGAAAGAGAGAATAAAAATAGCAATACAATATCTAGTAAATCTGTTAATAATAAAAATCACGGTCAGTGGACGGCAGTTTCTAACGGTTTTCAAAAAGGAGAAAGAAGAAAGCCTAGTGATCCTGTGAGCTCAGACGATGAACAAATAGATACACAAAGTGCGTTCTTTCAAAGGGCGGCCAGCAAGGCACCTCAGGTGCCTACAAATCACAGCAACTCATCGTCAGTAACGCATACCAAAGACAACTGCGAGCCTAGTAGACCAAGTAAAAGGGAATCAATACCTGTACAACAAGACAAATCCTCAGAAAAAAGAAGGGAGGATAAACACGATGAGAAGCCAGCTCATTTGGACCCAGTAGTGTTGAAGAGTCGAGAAATCGCCATGGAAGGCAACAAACTGGCAGAACAAGGGAACTACCAAGGTGCAGTCCGTAAATTCTCCGAAGCTATTGAACTAGATCGCAGTGACTTTAGGTTCTTTCGTAACAGATCTTATTGTTGGGATAAAATGGGACAATTTAATATGGCGTTAAAAGATGCAAATGAAGCTATCTCACTTGCTCCCAATCAAGCCAAAGGTTATTTCAGAAAAGGGAGAGCCTTGTCGTGTTTAAAGAGATTGGAAGAGGCTGAAGCAGCGTTCCAACATGTACGGGATTTAGATCCAGGGTGCAAGGATGCGGCCTTCGAGTTGACACGAGTTAGGGTACAAATTTTAGTGGACATGGGATTTTCTCACGCGGCGTCACAAGAAGCTATAAAAACTTACCATACTGTGCAGGCTGCCTGTGAGGCCATCTTAGCTGGAAAGGTGCAAACGTCTTCGGTTGAAGAGGAAGTCTACTATTCGGACGACGATGAAGATACCACGTCAAGCCCCCTGAGGTATGCAGCTGTGGCAGCGGCTGTTAAACCGTCGCTTGCGAGCGGTGTGAACCATACTCCTCACAGTAGCAGTTCCCTAGAAAACACTTACTCGCCTAGCAGAAAGAGCGCTGCGACCGTTCCAAACAATGAAGCTGCGCCGGGCCAAACGAAATGCGCTGCTCTTTGGGTTGGCAACGTGGAACCTTCGCTAGCCACAGAAAAGGACCTTACCCAGTTGTTTTCAGCATGTGGTAAGGTGATGAGTGTTCGACTGTTACCGGCGAAATACTGTGCCTTTGTAAACTATACTTCCCCAGAGTCTGCGGCGCTTGCTCTGGAGAAACTACAGAATGCCAGCTTCTGTGGACAGCATTTATTATTACGCTACCCAAATAATCAACCACCTCCTTTCGCAACAAAGCCAGTGCAACAAAGCCTGTCGAATGGACAGAGGCAAATTGTCATAGGCAAGGGAACTTCTCTTTCCTCTGGGACGAATGCTAACGTTAAAAGTGTGGGAAGAGGTGTAAATGAAAACAAGTCAAATGGGCCCGTCAATGGAAATGAATGTTACTTTTGGAGAACAACTGGATGCGCGTTCCAGGACCGCTGTAGATATGATCATATTCCAAGTAGTGAAGGTGTGGACTTCAAAATGAAGGCAAAAGGGAACTACGGAAAATAG

Transcript

g8544.t1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006237 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47678 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 31	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8544.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.