Gene detail

Detailed information of g8548.t2 in Acropora digitifera

Genomic Location: chr4Alt:10166064...10191244
NR annotation: XP_044175729.1, importin-4-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8548.t2

ATGGCGGATCTGGAGGAAATCCTTTTGAAGCTCCTAATTCCTGATAATACAGTAATACAACGGGCTACAGCTGAACTTCGCGAAGCTTTTAAAAATCCCGCTGTTGTACCTGGGCTTGTAACCGTTCTTGGCTCGTCTCAAAACCCACAGGTACGCCAGTATGCAGCAGTTTTGTTGAGGAGGAGGATTGTCAAGCAATGGACAAAATTGAGTCCTGAAGTACATGCCATGTTAAGAGAGTCTCTTTTGCACGTGTTGCTTCAAGAACCTGAGCCTGTTGTCAGGAACTCTGCAGCACAAGTAGTTAGTGTGATGGCCAAGCATGACTTACCAGCTAACCAGTGGCCAGAGCTGCTTGTTTTCCTTCAAGAGCACATCAAGTCACAACAAGCTTTTCAGAGAGAGATGGGGATGTTTCTTTTAACCTCTATCACAGAATCAGCTAATGAACAGCTAAGACCACACTTCCCATCACTCTTCCGGCTTTTTTCCACCACTTTGGAAGACAAGGAAAGTAAGCTGGTGCCATTTTATACCATCAGAGCATTAACATTTCTCATTGAGTGCGTTGGAACTGATGAAGTACCTTTAGTGAGACCATTGATTCCAAAAGTTGTGGCGTTCATCAATCAAATTGTTCCTGTAGACGAGGATAGAGCTTGTGATGCCATGGAAATATTTGATGAATTGGTAGAATCAGAAGTCGGTATTGTTGCACCACATTTGAAAGCTTTGGTGGAGTTCTGTCTTCAGATTGCCAGCAATAGTTCCTATGGCAATAACTTGAGAATAAAAGCACTTTACTTTGTTTGTTGGTTGGCAAGAGTCAAACCCAAGGCACTTATTAAGAACAAACTTTTGCTGCCCACATTGTCAGTTGTGTTCCCTTTGATGGCGTCACCACCTAATGAAGACGATGAATGCGAAGGAGGTGAAGAAGATGATGAAGATGGGTTTGAGGATGGAATAGAAGCAAGCAGACCTTGTGCTGTGGCTTCACAGGTTCTGGATATTTTGGCCCTCCATTTTCCTCCTGAGACTGTTATTCCACCATTGATGCAGTTTGTTATGCCAGCTCTTAATGATGAAGATGCTTACAAAAGAAAAGCAGCACTGTTAGCTCTAGCAGTACTGGCTGAAGGGTGTGCTGACTACATAAGAAACAGATACCTTCAAGCTGCCTTACAGACCATTTGTCAAGGTCTCTCAGATGGAAACTCAGTGGTCCAAAATGCTGCCCTATTTGCATTGGAACAAATGATTCATATAAGGCGAGTTGTCAATAAACACAGCTTGAAGAATGGCAATCCAGATATCAGTAAATATAGCGCCGATATTCTTCCCCTTCTCTTTGAGCGTCTGGTAAATTCCTCTAGCAGTGGAAAGAGTTCAACTAGCATAACAAGAACCTATTATGCATTGGAAACATTCTGTGAAAATCTAGGTGAGGGAATTCTCCCTTACCTTCCCGCATTGATGGAAAAACTTCTCCTAGCCTTGAAACATAGTTCAAGTGTGCAGATGAAGGAGTTGGCTATAAGTGCGATAGGTGCAACAGCCAGTGCTGCTAAGGAAGCCATGCTTCCTTATTTCCCTCAAATTGTTGAATTTATCAAGGAGTACCTCAGTAATTCAGAGTCCATAGAAAGGAACCTTCTAAGAGTGCAGGCCATTGATACCTTAGGTGTCCTGGCAAGAACCATCGGGGCAGATAACTTTATGCCTCTCGCTGATGAATGTGTTCAGCATGGAATGAGGCTCCTTGAGCAAGATAGAGATCCTGATCTGAGAAGATGCACTTATGGCCTGTTTGCGTCAGTCTCTACAATATTGAAAACTAACATGGGAAAATACCTTCAAGACATCGTAAAATTTATGATTGATTCACTTCAATCTACAGAAGGAATTGTGACTCATTATGCAAATGAGGAAGACCCCAGTTTCCTACTTGAGGATGAAGACCTGGGAGGAGAGTTGGAAGAGGGTGATGATGATGAAGTCACAGGGTATAGCGTTGAAAATGCTTATCTGGAGGAGAAGGAAGATACATGTAATGCGTTAGGAGAAATAGCTGAAAATTCAGGAACGGAGTTTCTTCCCTACTTAGATGAATCATTTCAGGAAGTTTTGAAACTCGTACAGTTTCCTCACACTGGGGTGCGGAAGGGAGCTGTTATGGCTGTCGGGCAGTTCTGTAAGGGATTCCATAATCTCCTGCTGGAAACTGGAACGGAGGACAAGACAGCACTACGGCGCATGCTCAACACAGCTATACCAACCTTCATCACTGTTATCACAAAGGACAAGGACAGATCAGTTTCCATGGCAACGCTCCAGTCACTGAATGAAGTGTTAAAGTCAGTCAAGTCTTTGATCGTTGATGAGCATGGCTACCCTGATGGAATCGCTAATGCTGCTAGAACTGTGCTAATGCAAAAGACTGCTTGCCAGCAAGGTGATGATGACGATGTGGATGACTCGGATCAGCAAGCTGAGTATGATGCGATGTTGATTGAATATGCTGGTGATATTCTCCCGTCTCTGGCCTCAGCTATAGGGGGAGCTGCATTTGCGCCATATTTCGCTGGATTTTTACCTCTCTTGCTCAAGAAAACTAGGAAATCATGTCCTGTGCCCGACAAATCGTTCGCCATTGGGACTATCTCGGAGATCCTGCTGAATATGGGTCACGCCATCGTTCCTTTTGTTCAACCGCTGTTCCCAGTTTTCATGACTTCGCTGAAAGATGAAGATGATGAAGTGAAAAGCAATACTATCTATGGCCTAGGTTTACTGGCTTTCTTTGGCGGAGACATCATTTTGCCGCATTATCGGACCATACTGGAAACTTTGTTCGTAATCCTGTCTCAGAACCAACCCCCACGAGTTGTGGACAATGTCTGTGGAGCAGTCAGCCGGATGATGATGGCAAATAGAAATTCTTTACCATTGGAGAAGGTTTTCCCAGGATTGCTGCAGTGCCTGCCTTTAAAAGAAGACTTTGAAGAGAATGATCCTGTGTATTCGTGCATTATTGAACTGTTTAGTGATCAACATCCTCTCATTAGGCAGTATTTGGCTCAAATTTTAGCAGTGTTCTCTCAGGTCCTCCCATCTGGCAATTTACAGGAAGGTATCCGTTGTGGCCTCATTAGTATGATACAAACAATTCAGCGCCAGTCTCCACAAAGATTCCAGAACATTTTGGCAGAATTGCCACAGGAGAATGCGCAAGTTTTGATGACTGCTGCCGCACTGCAGGCTCCTACATAG

Transcript

chr4Alt.g8548.t2

GTGTACTGCAGGCGTAAAAACCATCTCAAACGTGCAGGAAAAGATGGCGGATCTGGAGGAAATCCTTTTGAAGCTCCTAATTCCTGATAATACAGTAATACAACGGGCTACAGCTGAACTTCGCGAAGCTTTTAAAAATCCCGCTGTTGTACCTGGGCTTGTAACCGTTCTTGGCTCGTCTCAAAACCCACAGGTACGCCAGTATGCAGCAGTTTTGTTGAGGAGGAGGATTGTCAAGCAATGGACAAAATTGAGTCCTGAAGTACATGCCATGTTAAGAGAGTCTCTTTTGCACGTGTTGCTTCAAGAACCTGAGCCTGTTGTCAGGAACTCTGCAGCACAAGTAGTTAGTGTGATGGCCAAGCATGACTTACCAGCTAACCAGTGGCCAGAGCTGCTTGTTTTCCTTCAAGAGCACATCAAGTCACAACAAGCTTTTCAGAGAGAGATGGGGATGTTTCTTTTAACCTCTATCACAGAATCAGCTAATGAACAGCTAAGACCACACTTCCCATCACTCTTCCGGCTTTTTTCCACCACTTTGGAAGACAAGGAAAGTAAGCTGGTGCCATTTTATACCATCAGAGCATTAACATTTCTCATTGAGTGCGTTGGAACTGATGAAGTACCTTTAGTGAGACCATTGATTCCAAAAGTTGTGGCGTTCATCAATCAAATTGTTCCTGTAGACGAGGATAGAGCTTGTGATGCCATGGAAATATTTGATGAATTGGTAGAATCAGAAGTCGGTATTGTTGCACCACATTTGAAAGCTTTGGTGGAGTTCTGTCTTCAGATTGCCAGCAATAGTTCCTATGGCAATAACTTGAGAATAAAAGCACTTTACTTTGTTTGTTGGTTGGCAAGAGTCAAACCCAAGGCACTTATTAAGAACAAACTTTTGCTGCCCACATTGTCAGTTGTGTTCCCTTTGATGGCGTCACCACCTAATGAAGACGATGAATGCGAAGGAGGTGAAGAAGATGATGAAGATGGGTTTGAGGATGGAATAGAAGCAAGCAGACCTTGTGCTGTGGCTTCACAGGTTCTGGATATTTTGGCCCTCCATTTTCCTCCTGAGACTGTTATTCCACCATTGATGCAGTTTGTTATGCCAGCTCTTAATGATGAAGATGCTTACAAAAGAAAAGCAGCACTGTTAGCTCTAGCAGTACTGGCTGAAGGGTGTGCTGACTACATAAGAAACAGATACCTTCAAGCTGCCTTACAGACCATTTGTCAAGGTCTCTCAGATGGAAACTCAGTGGTCCAAAATGCTGCCCTATTTGCATTGGAACAAATGATTCATATAAGGCGAGTTGTCAATAAACACAGCTTGAAGAATGGCAATCCAGATATCAGTAAATATAGCGCCGATATTCTTCCCCTTCTCTTTGAGCGTCTGGTAAATTCCTCTAGCAGTGGAAAGAGTTCAACTAGCATAACAAGAACCTATTATGCATTGGAAACATTCTGTGAAAATCTAGGTGAGGGAATTCTCCCTTACCTTCCCGCATTGATGGAAAAACTTCTCCTAGCCTTGAAACATAGTTCAAGTGTGCAGATGAAGGAGTTGGCTATAAGTGCGATAGGTGCAACAGCCAGTGCTGCTAAGGAAGCCATGCTTCCTTATTTCCCTCAAATTGTTGAATTTATCAAGGAGTACCTCAGTAATTCAGAGTCCATAGAAAGGAACCTTCTAAGAGTGCAGGCCATTGATACCTTAGGTGTCCTGGCAAGAACCATCGGGGCAGATAACTTTATGCCTCTCGCTGATGAATGTGTTCAGCATGGAATGAGGCTCCTTGAGCAAGATAGAGATCCTGATCTGAGAAGATGCACTTATGGCCTGTTTGCGTCAGTCTCTACAATATTGAAAACTAACATGGGAAAATACCTTCAAGACATCGTAAAATTTATGATTGATTCACTTCAATCTACAGAAGGAATTGTGACTCATTATGCAAATGAGGAAGACCCCAGTTTCCTACTTGAGGATGAAGACCTGGGAGGAGAGTTGGAAGAGGGTGATGATGATGAAGTCACAGGGTATAGCGTTGAAAATGCTTATCTGGAGGAGAAGGAAGATACATGTAATGCGTTAGGAGAAATAGCTGAAAATTCAGGAACGGAGTTTCTTCCCTACTTAGATGAATCATTTCAGGAAGTTTTGAAACTCGTACAGTTTCCTCACACTGGGGTGCGGAAGGGAGCTGTTATGGCTGTCGGGCAGTTCTGTAAGGGATTCCATAATCTCCTGCTGGAAACTGGAACGGAGGACAAGACAGCACTACGGCGCATGCTCAACACAGCTATACCAACCTTCATCACTGTTATCACAAAGGACAAGGACAGATCAGTTTCCATGGCAACGCTCCAGTCACTGAATGAAGTGTTAAAGTCAGTCAAGTCTTTGATCGTTGATGAGCATGGCTACCCTGATGGAATCGCTAATGCTGCTAGAACTGTGCTAATGCAAAAGACTGCTTGCCAGCAAGGTGATGATGACGATGTGGATGACTCGGATCAGCAAGCTGAGTATGATGCGATGTTGATTGAATATGCTGGTGATATTCTCCCGTCTCTGGCCTCAGCTATAGGGGGAGCTGCATTTGCGCCATATTTCGCTGGATTTTTACCTCTCTTGCTCAAGAAAACTAGGAAATCATGTCCTGTGCCCGACAAATCGTTCGCCATTGGGACTATCTCGGAGATCCTGCTGAATATGGGTCACGCCATCGTTCCTTTTGTTCAACCGCTGTTCCCAGTTTTCATGACTTCGCTGAAAGATGAAGATGATGAAGTGAAAAGCAATACTATCTATGGCCTAGGTTTACTGGCTTTCTTTGGCGGAGACATCATTTTGCCGCATTATCGGACCATACTGGAAACTTTGTTCGTAATCCTGTCTCAGAACCAACCCCCACGAGTTGTGGACAATGTCTGTGGAGCAGTCAGCCGGATGATGATGGCAAATAGAAATTCTTTACCATTGGAGAAGGTTTTCCCAGGATTGCTGCAGTGCCTGCCTTTAAAAGAAGACTTTGAAGAGAATGATCCTGTGTATTCGTGCATTATTGAACTGTTTAGTGATCAACATCCTCTCATTAGGCAGTATTTGGCTCAAATTTTAGCAGTGTTCTCTCAGGTCCTCCCATCTGGCAATTTACAGGAAGGTATCCGTTGTGGCCTCATTAGTATGATACAAACAATTCAGCGCCAGTCTCCACAAAGATTCCAGAACATTTTGGCAGAATTGCCACAGGAGAATGCGCAAGTTTTGATGACTGCTGCCGCACTGCAGGCTCCTACATAGCGTCAGAAACGTGGTCAATTGTGTGAAGATACGGGGACGATGACGCCACTGCCTCCCTTCATTTATCAAACATCAATTGTTTGGTAGAATTGGGTTTTTCTACGGTTGTAACCGACGCTATTCGTGACCATCAAGCACTCTCAGAACTTTATTTATCAAATAGGCAATCCGACATAGCCCAAGGGGAGTCAAGAAACTGAACCGACCATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TEX9	Importin-4 OS=Homo sapiens OX=9606 GN=IPO4 PE=1 SV=2
Q8VI75	Importin-4 OS=Mus musculus OX=10090 GN=Ipo4 PE=1 SV=1
O60100	Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=kap123 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13513 all species →	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040122 all species →	Family	Importin beta family	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527 all species →	IMPORTIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20221	IPO4, RANBP4; importin-4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8548.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.