Gene detail

Detailed information of g855.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_022792898.1, zinc finger protein 622-like [Stylophora pistillata]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q969S3	Cytoplasmic 60S subunit biogenesis factor ZNF622 OS=Homo sapiens OX=9606 GN=ZNF622 PE=1 SV=1
Q91VY9	Cytoplasmic 60S subunit biogenesis factor ZNF622 OS=Mus musculus OX=10090 GN=Znf622 PE=1 SV=1
Q90Y35	Cytoplasmic 60S subunit biogenesis factor ZNF622 OS=Gallus gallus OX=9031 GN=ZNF622 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000019 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0001149 (this species only)
Orthogroup (gene family)	OG0001419 (this species only)
Orthogroup (gene family)	OG0001827 (this species only)
Orthogroup (gene family)	OG0002539 (this species only)
Orthogroup (gene family)	OG0003183 (this species only)
Orthogroup (gene family)	OG0006065 (this species only)
Orthogroup (gene family)	OG0008964 (this species only)
Orthogroup (gene family)	OG0012791 (this species only)
Orthogroup (gene family)	OG0016719 (this species only)
Orthogroup (gene family)	OG0018254 (this species only)
Orthogroup (gene family)	OG0029710 (this species only)
Orthogroup (gene family)	OG0041262 (this species only)
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan
PF13683 all species →	rve_3	Integrase core domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF17978 all species →	zf-RING_14	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF02263 all species →	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan
PF12756 all species →	zf-C2H2_2	C2H2 type zinc-finger (2 copies)	Family	Interproscan
PF12171 all species →	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR008983 all species →	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR042814 all species →	Family	MORN repeat-containing protein 5	Interproscan
IPR003409 all species →	Repeat	MORN repeat	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan
IPR002229 all species →	Family	Blood group Rhesus C/E/D polypeptide	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR047534 all species →	Domain	E3 ubiquitin-protein ligase parkin, BRcat domain	Interproscan
IPR041170 all species →	Domain	RING/Ubox-like zinc-binding domain	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR003977 all species →	Family	E3 ubiquitin-protein ligase parkin	Interproscan
IPR033195 all species →	Family	Glycine/inosamine-phosphate amidinotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015894 all species →	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR042427 all species →	Family	Zinc finger FYVE domain-containing protein 1	Interproscan
IPR041661 all species →	Domain	ZN622/Rei1/Reh1, zinc finger C2H2-type	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR022755 all species →	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR040025 all species →	Family	Zinc finger protein 622/Rei1/Reh1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46437 all species →	MORN REPEAT-CONTAINING PROTEIN 5	Interproscan
PTHR11730 all species →	AMMONIUM TRANSPORTER	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR22906 all species →	PROPERDIN	Interproscan
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan
PTHR10488 all species →	GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL	Interproscan
PTHR46624 all species →	AGAP002036-PA	Interproscan
PTHR13182 all species →	ZINC FINGER PROTEIN 622	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan
GO:0097272 all species →	Biological Process	ammonium homeostasis	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0001933 all species →	Biological Process	negative regulation of protein phosphorylation	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0010821 all species →	Biological Process	regulation of mitochondrion organization	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:1900407 all species →	Biological Process	regulation of cellular response to oxidative stress	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0015067 all species →	Molecular Function	amidinotransferase activity	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005545 all species →	Molecular Function	1-phosphatidylinositol binding	Interproscan
GO:0005547 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005811 all species →	Cellular Component	lipid droplet	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0043325 all species →	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0140042 all species →	Biological Process	lipid droplet formation	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00613	GATM; glycine amidinotransferase	EC:2.1.4.1	Arginine and proline metabolism	ko00330	deepkoala
K06580	SLC42A, RHAG, RHBG, RHCG, CD241; ammonium transporter Rh	-	CD molecules	ko04090	deepkoala
K14816	REI1; pre-60S factor REI1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.