Gene detail

Detailed information of g8557.t1 in Acropora digitifera

Genomic Location: chr4Alt:10260864...10272337
NR annotation: XP_015772092.1, PREDICTED: non-canonical poly(A) RNA polymerase PAPD5-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g8557.t1

ATGCTTTCCCCATTGATGATGGCTTCCAGAATGGGCTGGATTCAACAAGAGCAAAACGGTCCAACATTTGAAACATGGAGCGACGTGTTGGGGGACGTTAATTCACCATCGACAAAACCGGGAAATGTTTATGATGAAATGGCGAATTATATCCCTTTGAACCGTAAAAATAATTTACATGAAAATGTAGAGAGCACCACTTTCAAGAACATGATTAACGAGGGAAAAAATCGTGTCAGTAAGAAGAAAAAAATTGAAGACGGAACTCCTTGGTGGTCAAAGGATAAAAAGTATCCAGACGGCCCGGTGGGGCTTCACGAGGAAATGTGGGACTTTTACAACTTTATGAAGTATCGCCCGGTGGAACATGCTATGCGACGAGAGGTGATATCGAGAATTCAAAAAGTCGTTAAGGGACTGTGGCCAACAGCTGAAGTGGAGGTGTTTGGGAGCTTTAGAACGGGGCTTTATTTACCAACCAGTGACATAGACATTGTTATTTTCGGAAAGTGGGAGAGACTACCATTATGGACGCTCGAACAAGCTCTCACTGCAAATAAAATCGCCGAGGCTTCCACCATTAAAGTCTTGGATAAAGCTTCAGTTCCTATTATAAAGCTTACAGACCAAGTAACCAAGGTGAAATTGGACATAAGCTTTAACACCCCAGATGGACTGAAAGCAGCAGACTTTGTTAAGGATCAAATGGAGATTTTTCCTTGCCTTCCACATTTAGTACTTGTTTTGAAGCAGTTCCTTGTGCAGCGGGACCTGAATGAGGTGTTTGCTGGTGGAATAAGCTCCCACTCTCTTGTTTTAATGATAATCAGTTTTCTGCAGCAACATCCTAGAAAAGATGGAAGGACTCTTAGAAGCAACCTTGGAGTTCTTTTAATTGAATTCTTTGAACTCTATGGCAAACATTTTAATTATCAAGATGTTGGCATTCGCGTTAAGGATGGTGGATCATACTTCAACAAACAAGAGGCTTTTCATGGTATGGATGGAAACAGCCCAGATAATTATTGTACTCCTCTTTGCATTGAAGATCCCACTACAGAAGGCAACTACTTGGGAAAAAGCTCTTACAAATTCCTGGATGTGGTGCATTCCTTTGGTTATGCATATGGAATGTTGAGCAAGTCTATTGAATATGATGTTACTACAGACAGAACAAACCCTGGAGTGACAAAGGAAAGGGATTCTGTCGGATATCTTGGACAGATACTGAGGGTCAAAAGTGAAACACTAGAATATCGGGAATGGGTTGCCAGTGTGTGGTCGGTGGATAGTGCTCCACTCATTAAGCAATCAGCCCCTACATATGCCAGTATTGCAAATAGACATGTCCAGACTCATGCTATTACATCTCAAGATTCCTCTGACAAAAATGCCACATGGAACAGGTCACAATCAAACTTGGAAACTCTGATGACAGAAGGCAAGGGTAAACCTTTTGTCAAACATGCCAGTGTGGACTGCCTCTCAGTCAGGGGAATGTCTTCAGTTCAAAATTCAGCAGATTCACTAGCTCAAGATATGATACCTGAAAAGATAGCTGCTTATGAAACAAGAACTTCTGTTTTTGGAGGCTCTTCAAAATCTCTGAGCTTCCAACCTGCAAACAATAATGAATTGAGTTGTCCGTCTAAAGGGAGCTTGTATTCTGAAGCAATAAAGCAATCACCAACTAAAACCAAGCAAACATTCACCTCCATGCCCAAGACCTCTGCTGTTACTTCAACTTCAAAATCAAAATTGACTGCAAAATCTTCAAGATCCTCTGTTTCTGACGTAACACACATGGTTAAAACAGGGTCATCATCAGCAAGGTCTTCAAGCAAAACCTGTTTTTCAGACCCCATCTCAAAGGCTAAAGTTTCTTGTGATTCAGGATTGACATTTAGCAAGACCAATTTTGTTGACTCAGTGACCAAGACAAAGGAAAGAGATCTCCAGAAAACAATGGATGAGCAAAAATCTTCACCCACTTCAAATAGCAATAATACTGTAGTTTGTGTTCCACCAAAGTTGGATCTTAATCCTCCAAGTCAGCTCAGTAAAGACAATGGCATTGGGAAACAAAGTTCAACAATCACTGTTTCGACACCGACAAAGGACAATACTAGTAATTGCCAAAATAACAACATCACTGTCTCAAAGGACCCGACAAAACGAAAACATGGAAAACCAACCAAGAGTAAAAAGGAGAAGAGCTCTTAA

Transcript

chr4Alt.g8557.t1

GAGAAGCCCGATTTGTTAGAGAATCAATGCTTTCCCCATTGATGATGGCTTCCAGAATGGGCTGGATTCAACAAGAGCAAAACGGTCCAACATTTGAAACATGGAGCGACGTGTTGGGGGACGTTAATTCACCATCGACAAAACCGGGAAATGTTTATGATGAAATGGCGAATTATATCCCTTTGAACCGTAAAAATAATTTACATGAAAATGTAGAGAGCACCACTTTCAAGAACATGATTAACGAGGGAAAAAATCGTGTCAGTAAGAAGAAAAAAATTGAAGACGGAACTCCTTGGTGGTCAAAGGATAAAAAGTATCCAGACGGCCCGGTGGGGCTTCACGAGGAAATGTGGGACTTTTACAACTTTATGAAGTATCGCCCGGTGGAACATGCTATGCGACGAGAGGTGATATCGAGAATTCAAAAAGTCGTTAAGGGACTGTGGCCAACAGCTGAAGTGGAGGTGTTTGGGAGCTTTAGAACGGGGCTTTATTTACCAACCAGTGACATAGACATTGTTATTTTCGGAAAGTGGGAGAGACTACCATTATGGACGCTCGAACAAGCTCTCACTGCAAATAAAATCGCCGAGGCTTCCACCATTAAAGTCTTGGATAAAGCTTCAGTTCCTATTATAAAGCTTACAGACCAAGTAACCAAGGTGAAATTGGACATAAGCTTTAACACCCCAGATGGACTGAAAGCAGCAGACTTTGTTAAGGATCAAATGGAGATTTTTCCTTGCCTTCCACATTTAGTACTTGTTTTGAAGCAGTTCCTTGTGCAGCGGGACCTGAATGAGGTGTTTGCTGGTGGAATAAGCTCCCACTCTCTTGTTTTAATGATAATCAGTTTTCTGCAGCAACATCCTAGAAAAGATGGAAGGACTCTTAGAAGCAACCTTGGAGTTCTTTTAATTGAATTCTTTGAACTCTATGGCAAACATTTTAATTATCAAGATGTTGGCATTCGCGTTAAGGATGGTGGATCATACTTCAACAAACAAGAGGCTTTTCATGGTATGGATGGAAACAGCCCAGATAATTATTGTACTCCTCTTTGCATTGAAGATCCCACTACAGAAGGCAACTACTTGGGAAAAAGCTCTTACAAATTCCTGGATGTGGTGCATTCCTTTGGTTATGCATATGGAATGTTGAGCAAGTCTATTGAATATGATGTTACTACAGACAGAACAAACCCTGGAGTGACAAAGGAAAGGGATTCTGTCGGATATCTTGGACAGATACTGAGGGTCAAAAGTGAAACACTAGAATATCGGGAATGGGTTGCCAGTGTGTGGTCGGTGGATAGTGCTCCACTCATTAAGCAATCAGCCCCTACATATGCCAGTATTGCAAATAGACATGTCCAGACTCATGCTATTACATCTCAAGATTCCTCTGACAAAAATGCCACATGGAACAGGTCACAATCAAACTTGGAAACTCTGATGACAGAAGGCAAGGGTAAACCTTTTGTCAAACATGCCAGTGTGGACTGCCTCTCAGTCAGGGGAATGTCTTCAGTTCAAAATTCAGCAGATTCACTAGCTCAAGATATGATACCTGAAAAGATAGCTGCTTATGAAACAAGAACTTCTGTTTTTGGAGGCTCTTCAAAATCTCTGAGCTTCCAACCTGCAAACAATAATGAATTGAGTTGTCCGTCTAAAGGGAGCTTGTATTCTGAAGCAATAAAGCAATCACCAACTAAAACCAAGCAAACATTCACCTCCATGCCCAAGACCTCTGCTGTTACTTCAACTTCAAAATCAAAATTGACTGCAAAATCTTCAAGATCCTCTGTTTCTGACGTAACACACATGGTTAAAACAGGGTCATCATCAGCAAGGTCTTCAAGCAAAACCTGTTTTTCAGACCCCATCTCAAAGGCTAAAGTTTCTTGTGATTCAGGATTGACATTTAGCAAGACCAATTTTGTTGACTCAGTGACCAAGACAAAGGAAAGAGATCTCCAGAAAACAATGGATGAGCAAAAATCTTCACCCACTTCAAATAGCAATAATACTGTAGTTTGTGTTCCACCAAAGTTGGATCTTAATCCTCCAAGTCAGCTCAGTAAAGACAATGGCATTGGGAAACAAAGTTCAACAATCACTGTTTCGACACCGACAAAGGACAATACTAGTAATTGCCAAAATAACAACATCACTGTCTCAAAGGACCCGACAAAACGAAAACATGGAAAACCAACCAAGAGTAAAAAGGAGAAGAGCTCTTAATGTAAACTGAATGTGGATGTCATAGTTATAGTGGCTGAAATATTTATTGTGAACGTTAAGTTATCCTGCATGCTTTCTTATCAGTTTTTGCAGCTGATGATAACAATGTTATGGTAATCGTTTAGGGGAAATTTAATAGCTCAAAAAATCATTTACCAAAATGTAAATTATAGTTTTCAATGACAAGAATATTCAAATTTTGTAATATAGTACTTATTTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NDF8	Terminal nucleotidyltransferase 4B OS=Homo sapiens OX=9606 GN=TENT4B PE=1 SV=2
Q68ED3	Terminal nucleotidyltransferase 4B OS=Mus musculus OX=10090 GN=Tent4b PE=1 SV=2
Q6PB75	Terminal nucleotidyltransferase 4A OS=Mus musculus OX=10090 GN=Tent4a PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01909 all species →	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF03828 all species →	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045862 all species →	Family	Nucleotidyltransferase Trf4-like	Interproscan
IPR002934 all species →	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR002058 all species →	Domain	PAP/25A-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23092 all species →	POLY(A) RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0004652 all species →	Molecular Function	obsolete polynucleotide adenylyltransferase activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan
GO:0031499 all species →	Cellular Component	TRAMP complex	Interproscan
GO:1990817 all species →	Molecular Function	poly(A) RNA polymerase activity	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03514	PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7	EC:2.7.7.19	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.