Detailed information of g857.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_051789030.1, uncharacterized protein LOC127529451 [Erpetoichthys calabaricus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8NI36WD repeat-containing protein 36 OS=Homo sapiens OX=9606 GN=WDR36 PE=1 SV=2
O14053U3 small nucleolar RNA-associated protein 21 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1672.07 PE=3 SV=1
Q06078U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP21 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 activity RING|U-box
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04192Utp21Utp21 specific WD40 associated putative domain DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF04641Rtf2Rtf2 RING-fingerFamilyInterproscan
PF15906zf-NOSIPZinc-finger of nitric oxide synthase-interacting proteinDomainInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF00849PseudoU_synth_2RNA pseudouridylate synthaseFamilyInterproscan
PF00079SerpinSerpin (serine protease inhibitor)DomainInterproscan
PF00153Mito_carrMitochondrial carrier proteinRepeatInterproscan
PF00665rveIntegrase core domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR007319DomainSmall-subunit processome, Utp21Interproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR016818FamilyNitric oxide synthase-interacting proteinInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR003613DomainU-box domainInterproscan
IPR031790DomainNitric oxide synthase-interacting protein, zinc-fingerInterproscan
IPR013947FamilyMediator complex, subunit Med14Interproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR050958FamilyCell Adhesion and Cytoskeletal OrganizationInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR006145DomainPseudouridine synthase, RsuA/RluA-likeInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR006224Conserved_sitePseudouridine synthase, RluA-like, conserved siteInterproscan
IPR050188FamilyRluA Pseudouridine SynthaseInterproscan
IPR036986Homologous_superfamilyRNA-binding S4 domain superfamilyInterproscan
IPR042178Homologous_superfamilySerpin superfamily, domain 1Interproscan
IPR023796DomainSerpin domainInterproscan
IPR023795Conserved_siteSerpin, conserved siteInterproscan
IPR000215FamilySerpin familyInterproscan
IPR042185Homologous_superfamilySerpin superfamily, domain 2Interproscan
IPR036186Homologous_superfamilySerpin superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR023395Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR018108RepeatMitochondrial substrate/solute carrierInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR052160FamilyGypsy Retrotransposon Integrase-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47501TRANSPOSASE-RELATEDInterproscan
PTHR22840WD REPEAT-CONTAINING PROTEIN 36Interproscan
PTHR13063ENOS INTERACTING PROTEINInterproscan
PTHR12809MEDIATOR COMPLEX SUBUNITInterproscan
PTHR45080CONTACTIN 5Interproscan
PTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEInterproscan
PTHR11461SERINE PROTEASE INHIBITOR, SERPINInterproscan
PTHR24401SI:CH211-243P7.3-RELATEDInterproscan
PTHR47266ENDONUCLEASE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034388Cellular ComponentPwp2p-containing subcomplex of 90S preribosomeInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0070847Cellular Componentcore mediator complexInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0000455Biological Processenzyme-directed rRNA pseudouridine synthesisInterproscan
GO:0004867Molecular Functionserine-type endopeptidase inhibitor activityInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06179rluC; 23S rRNA pseudouridine955/2504/2580 synthaseEC:5.4.99.24
Ribosome biogenesisko03009deepkoala
Peptidases and inhibitorsko01002deepkoala
Spliceosomeko03041deepkoala
Ribosome biogenesisko03009deepkoala

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