Gene detail

Detailed information of g8577.t1 in Acropora digitifera

Genomic Location: chr4Alt:10502731...10508690
NR annotation: XP_029195971.2, ribosome-recycling factor, mitochondrial-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q166F5	Ribosome-recycling factor OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=frr PE=3 SV=1
Q9X5F0	Ribosome-recycling factor OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=frr PE=3 SV=2
Q1GRQ3	Ribosome-recycling factor OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) OX=317655 GN=frr PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01765 all species →	RRF	Ribosome recycling factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036191 all species →	Homologous_superfamily	RRF superfamily	Interproscan
IPR002661 all species →	Family	Ribosome recycling factor	Interproscan
IPR023584 all species →	Domain	Ribosome recycling factor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20982 all species →	RIBOSOME RECYCLING FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0043023 all species →	Molecular Function	ribosomal large subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02838	frr, MRRF, RRF; ribosome recycling factor	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8577.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

26.0Max TPM

18.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	18.24	25.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	25.98
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	25.16
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	24.94
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	24.63
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	24.62
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	23.27
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	22.63
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	22.43
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	21.29
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	21.26
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	20.91
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	19.92
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	19.60
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	19.24
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	19.21
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	19.13
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	19.12
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	18.60
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	18.46
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	17.96
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	17.95
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	17.58
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	17.24
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	17.24
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	16.92
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	16.76
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	16.27
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	15.77
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	15.64
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	15.55
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	14.67
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	14.56
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	14.28
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	14.18
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	13.73
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	13.38
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	10.95
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	10.22
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	10.20

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.