Gene detail

Detailed information of g8587.t1 in Tripedalia maipoensis

Genomic Location: scaffold_5:12357550...12427375
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11708 all species →	Slu7	Pre-mRNA splicing Prp18-interacting factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021715 all species →	Domain	Pre-mRNA-splicing factor SLU7 domain	Interproscan
IPR039974 all species →	Family	Pre-mRNA-splicing factor SLU7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12942 all species →	STEP II SPLICING FACTOR SLU7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0030628 all species →	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12819	SLU7; pre-mRNA-processing factor SLU7	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.