Gene detail

Detailed information of g8596.t1 in Acropora digitifera

Genomic Location: chr4Alt:10798053...10806810
NR annotation: XP_029195939.2, acyl-lipid (8-3)-desaturase-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O74212	Acyl-lipid (8-3)-desaturase OS=Mortierella alpina OX=64518 GN=DES1 PE=1 SV=1
Q9Y1W0	Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum OX=44689 GN=fadA PE=1 SV=1
Q1ZXQ5	Probable Delta(5) fatty acid desaturase C OS=Dictyostelium discoideum OX=44689 GN=DDB_G0294553 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00487 all species →	FA_desaturase	Fatty acid desaturase	Domain	Interproscan
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR012171 all species →	Family	Fatty acid desaturase	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR005804 all species →	Domain	Fatty acid desaturase domain	Interproscan
IPR018506 all species →	Binding_site	Cytochrome b5, heme-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19353 all species →	FATTY ACID DESATURASE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016717 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21735	DES5; acyl-lipid (8-3)-desaturase	EC:1.14.19.30	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8596.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

41.8Max TPM

19.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	18.98	41.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	41.78
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	34.90
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	31.74
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	31.35
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	31.26
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	25.09
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	24.83
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	24.48
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	24.06
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	23.79
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	23.09
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	22.83
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	21.86
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	21.45
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	21.15
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	20.90
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	20.82
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	20.60
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	20.39
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	17.74
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	17.66
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	17.54
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	16.87
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	16.85
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	15.72
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	15.71
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	15.64
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	15.45
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	14.21
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	13.62
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	13.01
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	11.45
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	9.06
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	8.90
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	8.48
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	8.14
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	7.02
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	6.56
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	4.14

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.