Gene detail

Detailed information of g86.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCU0924526.1, hypothetical protein [Hydrogenophaga sp.]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H3J6	Mitochondrial translation release factor in rescue OS=Homo sapiens OX=9606 GN=MTRFR PE=1 SV=1
Q80VP5	Mitochondrial translation release factor in rescue OS=Mus musculus OX=10090 GN=Mtrfr PE=1 SV=1
A5WUX7	Mitochondrial translation release factor in rescue OS=Danio rerio OX=7955 GN=mtrfr PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000046 (this species only)
Orthogroup (gene family)	OG0000436 (this species only)
Orthogroup (gene family)	OG0000454 (this species only)
Orthogroup (gene family)	OG0000959 (this species only)
Orthogroup (gene family)	OG0001320 (this species only)
Orthogroup (gene family)	OG0002033 (this species only)
Orthogroup (gene family)	OG0007089 (this species only)
Orthogroup (gene family)	OG0008620 (this species only)
Orthogroup (gene family)	OG0021363 (this species only)
Orthogroup (gene family)	OG0024339 (this species only)
Orthogroup (gene family)	OG0074686 (this species only)
Orthogroup (gene family)	OG0170684 (this species only)
Orthogroup (gene family)	OG0171327 (this species only)
Orthogroup (gene family)	OG0173148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01082 all species →	Cu2_monooxygen	Copper type II ascorbate-dependent monooxygenase, N-terminal domain	Domain	Interproscan
PF00472 all species →	RF-1	RF-1 domain	Family	Interproscan
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan
PF00167 all species →	FGF	Fibroblast growth factor	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF03024 all species →	Folate_rec	Folate receptor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036939 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily	Interproscan
IPR000323 all species →	Domain	Copper type II, ascorbate-dependent monooxygenase, N-terminal	Interproscan
IPR000945 all species →	Family	Dopamine beta-hydroxylase-like	Interproscan
IPR008977 all species →	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR045853 all species →	Homologous_superfamily	Peptide chain release factor class I superfamily	Interproscan
IPR000352 all species →	Domain	Peptide chain release factor class I	Interproscan
IPR052405 all species →	Family	Mitochondrial Translation Release Factor	Interproscan
IPR003689 all species →	Family	Zinc/iron permease	Interproscan
IPR050799 all species →	Family	Zinc Iron Protein (ZIP) Transporter	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR002209 all species →	Family	Fibroblast growth factor family	Interproscan
IPR008996 all species →	Homologous_superfamily	Cytokine IL1/FGF	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050776 all species →	Family	Ankyrin Repeat and Cyclin-Dependent Kinase Inhibitor	Interproscan
IPR003388 all species →	Domain	Reticulon	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR004269 all species →	Family	Folate receptor	Interproscan
IPR018143 all species →	Domain	Folate receptor-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10157 all species →	DOPAMINE BETA HYDROXYLASE RELATED	Interproscan
PTHR46203 all species →	PROBABLE PEPTIDE CHAIN RELEASE FACTOR C12ORF65	Interproscan
PTHR12191 all species →	SOLUTE CARRIER FAMILY 39	Interproscan
PTHR11486 all species →	FIBROBLAST GROWTH FACTOR	Interproscan
PTHR24201 all species →	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46599 all species →	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR10517 all species →	FOLATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016715 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0004500 all species →	Molecular Function	dopamine beta-monooxygenase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006589 all species →	Biological Process	octopamine biosynthetic process	Interproscan
GO:0030667 all species →	Cellular Component	secretory granule membrane	Interproscan
GO:0042420 all species →	Biological Process	dopamine catabolic process	Interproscan
GO:0042421 all species →	Biological Process	norepinephrine biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006875 all species →	Biological Process	obsolete intracellular metal ion homeostasis	Interproscan
GO:0071578 all species →	Biological Process	zinc ion import across plasma membrane	Interproscan
GO:0140410 all species →	Molecular Function	monoatomic cation:bicarbonate symporter activity	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0031362 all species →	Cellular Component	obsolete anchored component of external side of plasma membrane	Interproscan
GO:0032217 all species →	Molecular Function	riboflavin transmembrane transporter activity	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:1902444 all species →	Molecular Function	riboflavin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04358	FGF; fibroblast growth factor	-	Glycosaminoglycan binding proteins	ko00536	deepkoala
K13649	FOLR; folate receptor	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala
K23498	COXPD7; peptide chain release factor	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.