Detailed information of g860.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031566777.1, syndetin-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q96JG6Syndetin OS=Homo sapiens OX=9606 GN=VPS50 PE=1 SV=3
Q8CI71Syndetin OS=Mus musculus OX=10090 GN=Vps50 PE=1 SV=2
F1LSG8Syndetin OS=Rattus norvegicus OX=10116 GN=Vps50 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10474Syndetin_CSyndetin, C-terminalRepeatInterproscan
PF10475Vps54_NVacuolar-sorting protein 54, of GARP complex RepeatInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00071RasRas familyDomainInterproscan
PF16682MSL2-CXCCXC domain of E3 ubiquitin-protein ligase MSL2DomainInterproscan
PF17900Peptidase_M1_NPeptidase M1 N-terminal domainDomainInterproscan
PF01433Peptidase_M1Peptidase family M1 domainDomainInterproscan
PF13961DUF4219Domain of unknown function (DUF4219)DomainInterproscan
PF02926THUMPTHUMP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019514DomainSyndetin, C-terminalInterproscan
IPR040047FamilySyndetinInterproscan
IPR019515DomainVacuolar protein sorting-associated protein 54, N-terminalInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR032049DomainE3 ubiquitin-protein ligase Msl2, CXC domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR037922FamilyE3 ubiquitin-protein ligase MSL2Interproscan
IPR034016FamilyAminopeptidase N-typeInterproscan
IPR042097Homologous_superfamilyAminopeptidase N-like , N-terminal domain superfamliyInterproscan
IPR027268Homologous_superfamilyPeptidase M4/M1, CTD superfamilyInterproscan
IPR001930FamilyPeptidase M1, alanine aminopeptidase/leukotriene A4 hydrolaseInterproscan
IPR050344FamilyPeptidase M1 family aminopeptidasesInterproscan
IPR045357DomainAminopeptidase N-like , N-terminal domainInterproscan
IPR014782DomainPeptidase M1, membrane alanine aminopeptidaseInterproscan
IPR025314DomainDomain of unknown function DUF4219Interproscan
IPR040183FamilyTHUMP domain-containing protein 1-likeInterproscan
IPR004114DomainTHUMP domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13258UNCHARACTERIZEDInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR47981RAB FAMILYInterproscan
PTHR16048MSL2-RELATEDInterproscan
PTHR11533PROTEASE M1 ZINC METALLOPROTEASEInterproscan
PTHR13452THUMP DOMAIN CONTAINING PROTEIN 1-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000149Molecular FunctionSNARE bindingInterproscan
GO:0032456Biological Processendocytic recyclingInterproscan
GO:0042147Biological Processretrograde transport, endosome to GolgiInterproscan
GO:1990745Cellular ComponentEARP complexInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005764Cellular ComponentlysosomeInterproscan
GO:0005770Cellular Componentlate endosomeInterproscan
GO:0008333Biological Processendosome to lysosome transportInterproscan
GO:0045335Cellular Componentphagocytic vesicleInterproscan
GO:0090385Biological Processphagosome-lysosome fusionInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0043984Biological Processobsolete histone H4-K16 acetylationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0072487Cellular ComponentMSL complexInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0042277Molecular Functionpeptide bindingInterproscan
GO:0043171Biological Processpeptide catabolic processInterproscan
GO:0070006Molecular Functionmetalloaminopeptidase activityInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006400Biological ProcesstRNA modificationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06963TAN1, THUMPD1; tRNA acetyltransferase TAN1-Chromosome and associated proteinsko03036deepkoala
Membrane traffickingko04131deepkoala
GTP-binding proteinsko04031deepkoala
Transfer RNA biogenesisko03016deepkoala

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