Gene detail

Detailed information of g861.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047130510.1, probable ubiquitin carboxyl-terminal hydrolase FAF-X [Hydra vulgaris]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00507	Ubiquitin carboxyl-terminal hydrolase 9Y OS=Homo sapiens OX=9606 GN=USP9Y PE=1 SV=2
P70398	Ubiquitin carboxyl-terminal hydrolase 9X OS=Mus musculus OX=10090 GN=Usp9x PE=1 SV=2
Q93008	Ubiquitin carboxyl-terminal hydrolase 9X OS=Homo sapiens OX=9606 GN=USP9X PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000516 (this species only)
Orthogroup (gene family)	OG0000658 (this species only)
Orthogroup (gene family)	OG0000959 (this species only)
Orthogroup (gene family)	OG0003084 (this species only)
Orthogroup (gene family)	OG0004313 (this species only)
Orthogroup (gene family)	OG0004922 (this species only)
Orthogroup (gene family)	OG0005455 (this species only)
Orthogroup (gene family)	OG0007481 (this species only)
Orthogroup (gene family)	OG0027653 (this species only)
Orthogroup (gene family)	OG0059605 (this species only)
Orthogroup (gene family)	OG0170842 (this species only)
Orthogroup (gene family)	OG0171217 (this species only)
Orthogroup (gene family)	OG0172591 (this species only)
Orthogroup (gene family)	OG0173512 (this species only)
Orthogroup (gene family)	OG0174511 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00110 all species →	wnt	wnt family	Family	Interproscan
PF08231 all species →	SYF2	SYF2 splicing factor	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF03024 all species →	Folate_rec	Folate receptor family	Domain	Interproscan
PF08209 all species →	Sgf11	Sgf11 (transcriptional regulation protein)	Family	Interproscan
PF02735 all species →	Ku	Ku70/Ku80 beta-barrel domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00479 all species →	G6PD_N	Glucose-6-phosphate dehydrogenase, NAD binding domain	Domain	Interproscan
PF02781 all species →	G6PD_C	Glucose-6-phosphate dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005817 all species →	Family	Wnt	Interproscan
IPR013260 all species →	Family	mRNA splicing factor SYF2	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR018143 all species →	Domain	Folate receptor-like	Interproscan
IPR004269 all species →	Family	Folate receptor	Interproscan
IPR013246 all species →	Family	SAGA complex, Sgf11 subunit	Interproscan
IPR013243 all species →	Domain	SCA7 domain	Interproscan
IPR051078 all species →	Family	SAGA-associated factor 11	Interproscan
IPR038165 all species →	Homologous_superfamily	FlgT, C-terminal domain superfamily	Interproscan
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR006164 all species →	Domain	Ku70/Ku80 beta-barrel domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR001282 all species →	Family	Glucose-6-phosphate dehydrogenase	Interproscan
IPR022674 all species →	Domain	Glucose-6-phosphate dehydrogenase, NAD-binding	Interproscan
IPR019796 all species →	Active_site	Glucose-6-phosphate dehydrogenase, active site	Interproscan
IPR022675 all species →	Domain	Glucose-6-phosphate dehydrogenase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12027 all species →	WNT RELATED	Interproscan
PTHR13264 all species →	GCIP-INTERACTING PROTEIN P29	Interproscan
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan
PTHR10517 all species →	FOLATE RECEPTOR	Interproscan
PTHR46367 all species →	ATAXIN-7-LIKE PROTEIN 3	Interproscan
PTHR12604 all species →	KU AUTOANTIGEN DNA HELICASE	Interproscan
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan
PTHR23429 all species →	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD	Interproscan
PTHR47773 all species →	SI:DKEY-9I5.2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0031362 all species →	Cellular Component	obsolete anchored component of external side of plasma membrane	Interproscan
GO:0032217 all species →	Molecular Function	riboflavin transmembrane transporter activity	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:1902444 all species →	Molecular Function	riboflavin binding	Interproscan
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016578 all species →	Biological Process	obsolete histone deubiquitination	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0071819 all species →	Cellular Component	DUBm complex	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0043564 all species →	Cellular Component	Ku70:Ku80 complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000082 all species →	Biological Process	G1/S transition of mitotic cell cycle	Interproscan
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004693 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0010033 all species →	Biological Process	obsolete response to organic substance	Interproscan
GO:0010389 all species →	Biological Process	regulation of G2/M transition of mitotic cell cycle	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0030332 all species →	Molecular Function	cyclin binding	Interproscan
GO:0004345 all species →	Molecular Function	glucose-6-phosphate dehydrogenase activity	Interproscan
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0009051 all species →	Biological Process	pentose-phosphate shunt, oxidative branch	Interproscan
GO:0016614 all species →	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02091	CDK6; cyclin-dependent kinase 6	EC:2.7.11.22	Protein kinases	ko01001	deepkoala
K11363	SGF11; SAGA-associated factor 11	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.