Gene detail

Detailed information of g862.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047130510.1, probable ubiquitin carboxyl-terminal hydrolase FAF-X [Hydra vulgaris]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q93008	Ubiquitin carboxyl-terminal hydrolase 9X OS=Homo sapiens OX=9606 GN=USP9X PE=1 SV=4
P70398	Ubiquitin carboxyl-terminal hydrolase 9X OS=Mus musculus OX=10090 GN=Usp9x PE=1 SV=2
O00507	Ubiquitin carboxyl-terminal hydrolase 9Y OS=Homo sapiens OX=9606 GN=USP9Y PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000106 (this species only)
Orthogroup (gene family)	OG0000213 (this species only)
Orthogroup (gene family)	OG0000245 (this species only)
Orthogroup (gene family)	OG0000315 (this species only)
Orthogroup (gene family)	OG0001007 (this species only)
Orthogroup (gene family)	OG0002091 (this species only)
Orthogroup (gene family)	OG0003084 (this species only)
Orthogroup (gene family)	OG0004057 (this species only)
Orthogroup (gene family)	OG0005681 (this species only)
Orthogroup (gene family)	OG0008554 (this species only)
Orthogroup (gene family)	OG0012990 (this species only)
Orthogroup (gene family)	OG0027653 (this species only)
Orthogroup (gene family)	OG0173832 (this species only)
Orthogroup (gene family)	OG0174506 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12030 all species →	DUF3517	Domain of unknown function (DUF3517)	Family	Interproscan
PF12832 all species →	MFS_1_like	MFS_1 like family	Family	Interproscan
PF00755 all species →	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan
PF16211 all species →	Histone_H2A_C	C-terminus of histone H2A	Family	Interproscan
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan
PF03184 all species →	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF12848 all species →	ABC_tran_Xtn	ABC transporter	Domain	Interproscan
PF05186 all species →	Dpy-30	Dpy-30 motif	Motif	Interproscan
PF13297 all species →	SDE2_2C	Replication stress response SDE2 C-terminal	Domain	Interproscan
PF01048 all species →	PNP_UDP_1	Phosphorylase superfamily	Domain	Interproscan
PF14845 all species →	Glycohydro_20b2	beta-acetyl hexosaminidase like	Domain	Interproscan
PF00110 all species →	wnt	wnt family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021905 all species →	Domain	Ubiquitin C-terminal hydrolase-like, DUF3517	Interproscan
IPR024989 all species →	Domain	Major facilitator superfamily associated domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR051717 all species →	Family	Major facilitator superfamily MFSD6	Interproscan
IPR000542 all species →	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR042231 all species →	Homologous_superfamily	Choline/Carnitine o-acyltransferase, domain 2	Interproscan
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR039551 all species →	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR002119 all species →	Family	Histone H2A	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR032458 all species →	Conserved_site	Histone H2A conserved site	Interproscan
IPR032454 all species →	Domain	Histone H2A, C-terminal domain	Interproscan
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan
IPR004875 all species →	Domain	DDE superfamily endonuclease domain	Interproscan
IPR050863 all species →	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR022374 all species →	Family	Energy-dependent translational throttle protein EttA	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR032781 all species →	Domain	ABC-transporter extension domain	Interproscan
IPR007858 all species →	Conserved_site	Dpy-30 motif	Interproscan
IPR049629 all species →	Domain	DPY30/SDC1, dimerization/docking domain	Interproscan
IPR025086 all species →	Domain	SDE2-like, C-terminal domain	Interproscan
IPR051421 all species →	Family	RNA Processing and DNA Damage Response Regulator	Interproscan
IPR018016 all species →	Conserved_site	Nucleoside phosphorylase, conserved site	Interproscan
IPR035994 all species →	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan
IPR010059 all species →	Family	Uridine phosphorylase, eukaryotic	Interproscan
IPR000845 all species →	Domain	Nucleoside phosphorylase domain	Interproscan
IPR029019 all species →	Domain	Beta-hexosaminidase, eukaryotic type, N-terminal	Interproscan
IPR029018 all species →	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan
IPR005817 all species →	Family	Wnt	Interproscan
IPR043158 all species →	Homologous_superfamily	Wnt, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16172 all species →	UNCHARACTERIZED	Interproscan
PTHR22589 all species →	CARNITINE O-ACYLTRANSFERASE	Interproscan
PTHR23430 all species →	HISTONE H2A	Interproscan
PTHR19303 all species →	TRANSPOSON	Interproscan
PTHR43858 all species →	ENERGY-DEPENDENT TRANSLATIONAL THROTTLE PROTEIN ETTA	Interproscan
PTHR12786 all species →	SPLICING FACTOR SF3A-RELATED	Interproscan
PTHR43691 all species →	URIDINE PHOSPHORYLASE	Interproscan
PTHR12027 all species →	WNT RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0004092 all species →	Molecular Function	carnitine O-acetyltransferase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0019254 all species →	Biological Process	carnitine metabolic process, CoA-linked	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006342 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0045900 all species →	Biological Process	negative regulation of translational elongation	Interproscan
GO:0016763 all species →	Molecular Function	pentosyltransferase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009116 all species →	Biological Process	nucleoside metabolic process	Interproscan
GO:0004850 all species →	Molecular Function	uridine phosphorylase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009166 all species →	Biological Process	nucleotide catabolic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006218 all species →	Biological Process	uridine catabolic process	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00444	WNT5; wingless-type MMTV integration site family, member 5	-	Glycosaminoglycan binding proteins	ko00536	deepkoala
K00757	udp, UPP; uridine phosphorylase	EC:2.4.2.3	Drug metabolism - other enzymes	ko00983	deepkoala
K06020	ettA; energy-dependent translational throttle protein EttA	-	Transfer RNA biogenesis	ko03016	deepkoala
K11251	H2A; histone H2A	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.