Gene detail

Detailed information of g8625.t1 in Acropora digitifera

Genomic Location: chr4Alt:11215232...11224940
NR annotation: XP_044169065.1, dysbindin-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

No Pfam domain signature was detected for g8625.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR007531 all species →	Family	Dysbindin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16294 all species →	DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006469 all species →	Biological Process	negative regulation of protein kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20189	DTNBP1, BLOC1S8; dysbindin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8625.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

119.8Max TPM

66.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	66.94	119.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	119.78
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	117.39
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	112.34
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	107.19
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	97.83
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	93.58
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	91.10
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	86.94
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	73.22
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	73.10
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	67.37
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	66.99
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	66.03
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	65.40
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	63.73
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	63.64
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	63.54
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	63.48
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	60.81
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	57.43
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	57.27
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	57.25
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	57.20
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	56.63
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	55.46
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	55.29
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	54.68
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	53.12
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	52.94
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	52.92
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	52.15
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	52.04
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	51.66
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	50.97
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	50.44
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	49.14
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	49.03
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	46.62
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	44.88

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.