Gene detail

Detailed information of g863.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_053314611.1, bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase isoform X1 [Spea bombifrons]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P02285	Histone H2B, sperm OS=Marthasterias glacialis OX=7609 PE=1 SV=2
P02286	Histone H2B, gonadal OS=Asterias rubens OX=7604 PE=1 SV=2
P48557	Histone H2B OS=Holothuria tubulosa OX=7685 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000039 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000087 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000213 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000250 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000415 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000461 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002911 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006215 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008982 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0014794 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015023 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0019989 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF13837 all species →	Myb_DNA-bind_4	Myb/SANT-like DNA-binding domain	Domain	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF01019 all species →	G_glu_transpept	Gamma-glutamyltranspeptidase	Domain	Interproscan
PF14214 all species →	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan
PF05970 all species →	PIF1	PIF1-like helicase	Family	Interproscan
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan
PF04613 all species →	LpxD	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD	Family	Interproscan
PF00132 all species →	Hexapep	Bacterial transferase hexapeptide (six repeats)	Repeat	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF07571 all species →	TAF6_C	TAF6 C-terminal HEAT repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR044822 all species →	Domain	Myb/SANT-like DNA-binding domain 4	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR011949 all species →	Family	HAD-superfamily hydrolase, subfamily IA, REG-2-like	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR051828 all species →	Family	HAD-like hydrolase domain-containing protein	Interproscan
IPR044924 all species →	Homologous_superfamily	HAD-superfamily hydrolase, subfamily IA, REG-2-like, capping domain superfamily	Interproscan
IPR006439 all species →	Family	HAD hydrolase, subfamily IA	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR043137 all species →	Homologous_superfamily	Gamma-glutamyltranspeptidase, small subunit	Interproscan
IPR000101 all species →	Family	Gamma-glutamyltranspeptidase	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025476 all species →	Domain	Helitron helicase-like domain	Interproscan
IPR010285 all species →	Family	DNA helicase Pif1-like	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR000558 all species →	Family	Histone H2B	Interproscan
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan
IPR007691 all species →	Family	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD	Interproscan
IPR020573 all species →	Domain	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region	Interproscan
IPR011004 all species →	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR001451 all species →	Repeat	Hexapeptide repeat	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR052227 all species →	Family	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR046344 all species →	Homologous_superfamily	TAF6, C-terminal HEAT repeat domain superfamily	Interproscan
IPR011442 all species →	Domain	TAF6, C-terminal HEAT repeat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47595 all species →	HEAT SHOCK 70 KDA PROTEIN 14	Interproscan
PTHR10127 all species →	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan
PTHR46585 all species →	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan
PTHR46191 all species →	-	Interproscan
PTHR11686 all species →	GAMMA GLUTAMYL TRANSPEPTIDASE	Interproscan
PTHR23428 all species →	HISTONE H2B	Interproscan
PTHR43378 all species →	UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE	Interproscan
PTHR45899 all species →	RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006751 all species →	Biological Process	glutathione catabolic process	Interproscan
GO:0036374 all species →	Molecular Function	glutathione hydrolase activity	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0009245 all species →	Biological Process	lipid A biosynthetic process	Interproscan
GO:0016410 all species →	Molecular Function	N-acyltransferase activity	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005547 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02536	lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	EC:2.3.1.191	Lipopolysaccharide biosynthesis proteins	ko01005	deepkoala
K07025	K07025; putative hydrolase of the HAD superfamily	-	General function prediction only	-	deepkoala
K11252	H2B; histone H2B	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.