Gene detail

Detailed information of g8640.t1 in Acropora digitifera

Genomic Location: chr4Alt:11373832...11383613
NR annotation: XP_029201424.1, b(0,+)-type amino acid transporter 1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QXA6	b(0,+)-type amino acid transporter 1 OS=Mus musculus OX=10090 GN=Slc7a9 PE=1 SV=1
P82252	b(0,+)-type amino acid transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc7a9 PE=1 SV=1
Q01650	Large neutral amino acids transporter small subunit 1 OS=Homo sapiens OX=9606 GN=SLC7A5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050598 all species →	Family	Cellular Amino Acid Transporter	Interproscan
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11785 all species →	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003333 all species →	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015179 all species →	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g8640.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8640.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

384.9Max TPM

189.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	189.81	384.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	384.89
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	320.05
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	297.75
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	278.41
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	240.46
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	237.59
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	236.68
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	235.53
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	221.11
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	209.36
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	202.16
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	201.14
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	188.96
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	182.84
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	182.52
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	181.68
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	179.16
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	179.08
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	178.32
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	175.30
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	175.22
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	174.95
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	172.13
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	171.80
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	162.31
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	162.24
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	161.57
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	159.06
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	158.16
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	156.28
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	150.74
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	149.28
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	145.83
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	140.79
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	138.97
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	128.81
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	127.89
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	127.67
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	125.97

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.