Gene detail

Detailed information of g8652.t1 in Acropora digitifera

Genomic Location: chr4Alt:11525815...11528533
NR annotation: XP_015751726.1, PREDICTED: ER membrane protein complex subunit 4-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GR43	ER membrane protein complex subunit 4 OS=Xenopus laevis OX=8355 GN=emc4 PE=2 SV=1
Q5J8M3	ER membrane protein complex subunit 4 OS=Homo sapiens OX=9606 GN=EMC4 PE=1 SV=2
Q9CZX9	ER membrane protein complex subunit 4 OS=Mus musculus OX=10090 GN=Emc4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06417 all species →	DUF1077	Protein of unknown function (DUF1077)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009445 all species →	Family	TMEM85/ER membrane protein complex subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19315 all species →	ER MEMBRANE PROTEIN COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0072546 all species →	Cellular Component	EMC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23565	EMC4, TMEM85; ER membrane protein complex subunit 4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g8652.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

83.6Max TPM

66.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	66.14	83.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	83.64
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	79.92
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	78.40
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	78.37
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	77.66
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	77.61
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	77.10
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	76.16
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	75.87
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	75.05
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	72.76
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	72.09
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	71.43
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	70.51
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	68.46
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	67.29
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	66.66
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	66.55
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	66.36
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	66.17
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	65.65
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	64.02
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	63.38
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	62.44
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	61.42
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	61.34
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	61.06
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	60.99
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	59.66
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	59.24
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	59.22
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	56.68
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	55.39
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	54.64
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	54.57
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	53.71
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	53.69
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	53.27
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	50.87

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.